RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 K7EIL1 84 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 SERPINA1P01009 418 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 CD2P06729 351 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 CRHP06850 196 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 REEP5Q00765 189 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 SPA17Q15506 151 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 TAF1AQ15573 450 aaPredicted RBP0.13□□□□□ -2.39
VPS50-216ENST00000484954 SPATA8Q6RVD6 105 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 C4orf22Q6V702 233 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 MNS1Q8NEH6 495 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 RAB37Q96AX2 223 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 SMR3AQ99954 134 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 GGACTQ9BVM4 153 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 MED29Q9NX70 200 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 PRNDQ9UKY0 176 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 SBF1O95248 1867 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 SCN8AQ9UQD0 1980 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 SCN10AQ9Y5Y9 1956 aa0.13□□□□□ -2.39
VPS50-216ENST00000484954 NAV3Q8IVL0 2385 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 F8W1H4 67 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 HMGB3O15347 200 aaKnown RBP0.12□□□□□ -2.39
VPS50-216ENST00000484954 CST8O60676 142 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 PIAS1O75925 651 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 IFNA7P01567 189 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 FREM3P0C091 2139 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 CXCL8P10145 99 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 NFYBP25208 207 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 NCALDP61601 193 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 UBE2BP63146 152 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 GNG5P63218 68 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 CDK6Q00534 326 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 CIRBPQ14011 172 aaKnown RBP0.12□□□□□ -2.39
VPS50-216ENST00000484954 EIF5AL1Q6IS14 154 aaKnown RBP0.12□□□□□ -2.39
VPS50-216ENST00000484954 C2orf82Q6UX34 121 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 PLPP5Q8NEB5 264 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 OR5D14Q8NGL3 314 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 PPTC7Q8NI37 304 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 POP5Q969H6 163 aaKnown RBP0.12□□□□□ -2.39
VPS50-216ENST00000484954 CARD19Q96LW7 228 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 POPDC3Q9HBV1 291 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 TNFSF18Q9UNG2 199 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 ARL2BPQ9Y2Y0 163 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 PLXND1Q9Y4D7 1925 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 MUC4Q99102 2169 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 CACNA1AO00555 2505 aa0.12□□□□□ -2.39
VPS50-216ENST00000484954 DUXBA0A1W2PPF3 345 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 E2F6O75461 281 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 ERC2-IT1O76042 136 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 CXCL1P09341 107 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 COX7CP15954 63 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 EIF3IQ13347 325 aaKnown RBP0.11□□□□□ -2.39
VPS50-216ENST00000484954 BCL2L15Q5TBC7 163 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 HAGHLQ6PII5 290 aaPredicted RBP0.11□□□□□ -2.39
VPS50-216ENST00000484954 DHRS4L2Q6PKH6 230 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 TMEM14EPQ6UXP3 125 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 OR10AC1Q8NH08 325 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 CHCHD1Q96BP2 118 aaKnown RBP0.11□□□□□ -2.39
VPS50-216ENST00000484954 ZHX1-C8orf76Q96EF9 292 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 HYLS1Q96M11 299 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 GPX7Q96SL4 187 aaPredicted RBP0.11□□□□□ -2.39
VPS50-216ENST00000484954 PRRT1Q99946 306 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 RNF11Q9Y3C5 154 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 STAB1Q9NY15 2570 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 TNS3Q68CZ2 1445 aa0.11□□□□□ -2.39
VPS50-216ENST00000484954 PCF11O94913 1555 aaKnown RBP0.11□□□□□ -2.39
VPS50-216ENST00000484954 CACNA1EQ15878 2313 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 CECR2Q9BXF3 1484 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 MAST4O15021 2626 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 CITO14578 2027 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 ARHGEF11O15085 1522 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 TRAV27A0A087WT01 109 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 IGLV3-32A0A0A0MS00 114 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 C17orf112F2Z3M2 114 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 M0R233 179 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 GGCTO75223 188 aaKnown RBP0.1□□□□□ -2.39
VPS50-216ENST00000484954 IGLV3-1P01715 115 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 OR10J4P0C629 311 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 RAB5CP51148 216 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 TMBIM6P55061 237 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 ARPP19P56211 112 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 FXYD4P59646 89 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 MYL5Q02045 173 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 MSMO1Q15800 293 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 HACD4Q5VWC8 232 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 LINC00575Q6W349 94 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 PHF5AQ7RTV0 110 aaKnown RBP0.1□□□□□ -2.39
VPS50-216ENST00000484954 OR5D16Q8NGK9 328 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 OR10AG1Q8NH19 301 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 OR4K15Q8NH41 348 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 PSMF1Q92530 271 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 PAIP2Q9BPZ3 127 aaKnown RBP0.1□□□□□ -2.39
VPS50-216ENST00000484954 PBOV1Q9GZY1 135 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 WFDC10AQ9H1F0 79 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 CACYBPQ9HB71 228 aaKnown RBP0.1□□□□□ -2.39
VPS50-216ENST00000484954 PYCARDQ9ULZ3 195 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 ARL5AQ9Y689 179 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 E9PCH4 1651 aa0.1□□□□□ -2.39
VPS50-216ENST00000484954 HEATR1Q9H583 2144 aaKnown RBP0.1□□□□□ -2.39
VPS50-216ENST00000484954 SONP18583 2426 aaKnown RBP0.09□□□□□ -2.39
VPS50-216ENST00000484954 SPTBN4Q9H254 2564 aa0.09□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms