RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 RPRMQ9NS64 109 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 PLA2G2EQ9NZK7 142 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 FUT9Q9Y231 359 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 IGLV1-51P01701 117 aa9.24□□□□□ -0.93
SDC1-206ENST00000482879 RPL11P62913 178 aaKnown RBP9.24□□□□□ -0.93
SDC1-206ENST00000482879 CD300EQ496F6 205 aaPredicted RBP9.24□□□□□ -0.93
SDC1-206ENST00000482879 RPP25LQ8N5L8 163 aaKnown RBP9.24□□□□□ -0.93
SDC1-206ENST00000482879 GPR61Q9BZJ8 451 aa9.24□□□□□ -0.93
SDC1-206ENST00000482879 ACTR3CQ9C0K3 210 aaPredicted RBP9.24□□□□□ -0.93
SDC1-206ENST00000482879 IGKV3-7A0A075B6H7 116 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 HELTA6NFD8 242 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 UMAD1C9J7I0 102 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 EIF3GO75821 320 aaKnown RBP eCLIP9.23□□□□□ -0.93
SDC1-206ENST00000482879 CD5P06127 495 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 RPL7P18124 248 aaKnown RBP9.23□□□□□ -0.93
SDC1-206ENST00000482879 GALR1P47211 349 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 CDC34P49427 236 aaPredicted RBP9.23□□□□□ -0.93
SDC1-206ENST00000482879 OXLD1Q5BKU9 147 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 FAM90A2PQ658T7 463 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 SIGLEC15Q6ZMC9 328 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 RBPMS2Q6ZRY4 209 aaKnown RBP9.23□□□□□ -0.93
SDC1-206ENST00000482879 OR2K2Q8NGT1 345 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 PHYHIPLQ96FC7 376 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 GPR82Q96P67 336 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 PKD1L1Q8TDX9 2849 aa9.23□□□□□ -0.93
SDC1-206ENST00000482879 TRAV25A0A0B4J276 109 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 IZUMO1RA6ND01 250 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 ZNF785A8K8V0 405 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 HMGB3O15347 200 aaKnown RBP9.22□□□□□ -0.93
SDC1-206ENST00000482879 TAS2R45P59539 299 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 ALKAL2Q6UX46 152 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 BPIFA4PQ86YQ2 179 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 TMEM61Q8N0U2 210 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 GBGT1Q8N5D6 347 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 FAM213BQ8TBF2 198 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 RAB24Q969Q5 203 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 FAM167A-AS1Q96KT0 104 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 SLC25A2Q9BXI2 301 aa9.22□□□□□ -0.93
SDC1-206ENST00000482879 MGAM2Q2M2H8 2515 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 CTXND1A0A1B0GTU2 59 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 DNASE2O00115 360 aaPredicted RBP9.21□□□□□ -0.94
SDC1-206ENST00000482879 TSPAN4O14817 238 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 ATF4P18848 351 aaPredicted RBP9.21□□□□□ -0.94
SDC1-206ENST00000482879 FHITP49789 147 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 SULT1A2P50226 295 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 RAB5CP51148 216 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 PAFAH1B2P68402 229 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 GUCA2BQ16661 112 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 KHDC3LQ587J8 217 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 FAM74A1Q5RGS3 127 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 LCN12Q6JVE5 192 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 DPPA3Q6W0C5 159 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 WFDC3Q8IUB2 231 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 STXBP6Q8NFX7 210 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 PAXXQ9BUH6 204 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 OR51M1Q9H341 326 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 SMAD5-AS1Q9Y6J3 95 aa9.21□□□□□ -0.94
SDC1-206ENST00000482879 MRPS12O15235 138 aaKnown RBP9.2□□□□□ -0.94
SDC1-206ENST00000482879 WIPF1O43516 503 aa9.2□□□□□ -0.94
SDC1-206ENST00000482879 OR7C2O60412 319 aa9.2□□□□□ -0.94
SDC1-206ENST00000482879 SNRPCP09234 159 aaKnown RBP9.2□□□□□ -0.94
SDC1-206ENST00000482879 PYYP10082 97 aa9.2□□□□□ -0.94
SDC1-206ENST00000482879 TFPI2P48307 235 aa9.2□□□□□ -0.94
SDC1-206ENST00000482879 ZNF726P1Q15940 193 aa9.2□□□□□ -0.94
SDC1-206ENST00000482879 LCN15Q6UWW0 184 aa9.2□□□□□ -0.94
SDC1-206ENST00000482879 SSX7Q7RTT5 188 aa9.2□□□□□ -0.94
SDC1-206ENST00000482879 MS4A6AQ9H2W1 248 aa9.2□□□□□ -0.94
SDC1-206ENST00000482879 TMEM14CQ9P0S9 112 aa9.2□□□□□ -0.94
SDC1-206ENST00000482879 G3V4G9 280 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 STAG3L2P0CL84 134 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 STAG3L3P0CL85 134 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 HIST1H1EP10412 219 aaKnown RBP9.19□□□□□ -0.94
SDC1-206ENST00000482879 GP9P14770 177 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 TEX261Q6UWH6 196 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 PQLC2Q6ZP29 291 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 RNF141Q8WVD5 230 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 ZNF503Q96F45 646 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 NRN1Q9NPD7 142 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 CMYA5Q8N3K9 4069 aa9.19□□□□□ -0.94
SDC1-206ENST00000482879 A0A087X0K7 114 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 MAP1LC3B2A6NCE7 125 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 ZNF705EA8MWA4 302 aaPredicted RBP9.18□□□□□ -0.94
SDC1-206ENST00000482879 H3BQ15 152 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 H3BTX0 84 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 CXorf1O96002 111 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 IFNA7P01567 189 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 H2AFB1P0C5Y9 115 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 OR10J4P0C629 311 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 ARL14EPLP0DKL9 152 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 IGLC2P0DOY2 106 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 FGF8P55075 233 aaPredicted RBP9.18□□□□□ -0.94
SDC1-206ENST00000482879 SAMD5Q5TGI4 173 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 ZNF680Q8NEM1 530 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 LRRC20Q8TCA0 184 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 SFT2D1Q8WV19 159 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 MBD3L1Q8WWY6 194 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 C17orf77Q96MU5 243 aa9.18□□□□□ -0.94
SDC1-206ENST00000482879 SPAG8Q99932 426 aaPredicted RBP9.18□□□□□ -0.94
SDC1-206ENST00000482879 MAP1LC3BQ9GZQ8 125 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms