RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 C11orf53Q8IXP5 236 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 C11orf44Q8N8P7 122 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 Q9H3A6 140 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 SMDT1Q9H4I9 107 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 AAMDCQ9H7C9 122 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 HIGD1AQ9Y241 93 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 M0R381 172 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 C2orf83Q53S99 150 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 FAM74A4Q5TZK3 123 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 TMEM200BQ69YZ2 307 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 ASCL4Q6XD76 172 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 NUP35Q8NFH5 326 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 TMEM186Q96B77 213 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 LINC00477Q96M19 166 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 TXNDC17Q9BRA2 123 aa4.04□□□□□ -1.76
CCDC39-204ENST00000476379 ZNF469Q96JG9 3925 aaPredicted RBP4.04□□□□□ -1.76
CCDC39-204ENST00000476379 ADAMTS20P59510 1910 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 SRRM5B3KS81 715 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 C19orf84I3L1E1 186 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 ZNF324O75467 553 aaPredicted RBP4.03□□□□□ -1.76
CCDC39-204ENST00000476379 HIST1H1EP10412 219 aaKnown RBP4.03□□□□□ -1.76
CCDC39-204ENST00000476379 CKS2P33552 79 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 FBLN7Q53RD9 439 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 GTF2H5Q6ZYL4 71 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 LINC00596Q86U02 117 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 NIT1Q86X76 327 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 ZBTB34Q8NCN2 500 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 A0A0G2JNJ9 132 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.03□□□□□ -1.76
CCDC39-204ENST00000476379 K7EQM0 130 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 PSG1P11464 419 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 WT1-ASQ06250 92 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 C1orf185Q5T7R7 199 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 LYRM7Q5U5X0 104 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 SEM1Q6ZVN7 128 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 OR4C13Q8NGP0 309 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 ZNF502Q8TBZ5 544 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 TMEM160Q9NX00 188 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 Q9UFV3 132 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 RABAC1Q9UI14 185 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 FAM215AQ9Y5M1 114 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 IGHV3-64A0A075B6Q5 118 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.03□□□□□ -1.76
CCDC39-204ENST00000476379 A0A1W2PS18 150 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 TMEM213A2RRL7 107 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 FAM90A26D6RGX4 464 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 ETV2O00321 342 aaPredicted RBP4.03□□□□□ -1.76
CCDC39-204ENST00000476379 TIMM23O14925 209 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 CD3EP07766 207 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 COX5BP10606 129 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 GLRXP35754 106 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 CFHR2P36980 270 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 TIMM23BQ5SRD1 257 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 AMMECR1LQ6DCA0 310 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 FOXL2NBQ6ZUU3 175 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 LYPD6BQ8NI32 183 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 PERPQ96FX8 193 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 MAP1LC3CQ9BXW4 147 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 JKAMPQ9P055 326 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 UQCR10Q9UDW1 63 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 HIVEP1P15822 2718 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 H3BUT2 72 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 UPK2O00526 184 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 MPDU1O75352 247 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 TCRAP04437 139 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 RPL7P18124 248 aaKnown RBP4.03□□□□□ -1.76
CCDC39-204ENST00000476379 WDR73Q6P4I2 378 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 RNF182Q8N6D2 247 aa4.03□□□□□ -1.76
CCDC39-204ENST00000476379 IGHV1-69-2A0A0G2JMI3 117 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 A0A1W2PPI3 338 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 ARMS2P0C7Q2 107 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 TDGF1P3P51864 188 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 CACNG7P62955 275 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 RELQ04864 619 aaPredicted RBP4.02□□□□□ -1.77
CCDC39-204ENST00000476379 CD69Q07108 199 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 BRD3OSQ6XYD6 125 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 TMEM136Q6ZRR5 245 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 MIEN1Q9BRT3 115 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 CHODLQ9H9P2 273 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 MBNL3Q9NUK0 354 aaKnown RBP4.02□□□□□ -1.77
CCDC39-204ENST00000476379 A0A1W2PRE2 83 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 HLA-DQA1P01909 254 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 ZNF788Q6ZQV5 615 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 TMEM144Q7Z5S9 345 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 AMN1Q8IY45 258 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 ZNF738Q8NE65 137 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 VSTM2AQ8TAG5 236 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 TSKUQ8WUA8 353 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 MXRA5Q9NR99 2828 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 IGHV3OR16-12A0A075B7B8 117 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 TRAV26-2A0A0B4J265 109 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 C17orf100A8MU93 164 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 A8MWL6 223 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 H3BVH4 76 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 CIDEAO60543 219 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 ERCC8Q13216 396 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 C17orf58Q2M2W7 97 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 RUSC1-AS1Q66K80 236 aa4.02□□□□□ -1.77
CCDC39-204ENST00000476379 FAM71F2Q6NXP2 309 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms