RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 C20orf24Q9BUV8 137 aa7.41□□□□□ -1.22
SF3A1-207ENST00000471342 TMPRSS5Q9H3S3 457 aa7.41□□□□□ -1.22
SF3A1-207ENST00000471342 TMEM14CQ9P0S9 112 aa7.41□□□□□ -1.22
SF3A1-207ENST00000471342 NOTCH3Q9UM47 2321 aa7.41□□□□□ -1.22
SF3A1-207ENST00000471342 DNAH9Q9NYC9 4486 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 A0A087X0K7 114 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 C17orf112F2Z3M2 114 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 SLC17A3O00476 420 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 HMGB3O15347 200 aaKnown RBP7.4□□□□□ -1.22
SF3A1-207ENST00000471342 NPPCP23582 126 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 CD300EQ496F6 205 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-207ENST00000471342 C1orf194Q5T5A4 169 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 FAM78BQ5VT40 261 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 C10orf113Q5VZT2 155 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 FAM122CQ6P4D5 195 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 TMEM61Q8N0U2 210 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 OR4F17Q8NGA8 305 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 DPF1Q92782 380 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 C20orf173Q96LM9 149 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 OR4F4Q96R69 305 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 PBDC1Q9BVG4 233 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 SLC25A22Q9H936 323 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 RABAC1Q9UI14 185 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 HIGD1AQ9Y241 93 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 UFC1Q9Y3C8 167 aa7.4□□□□□ -1.22
SF3A1-207ENST00000471342 FBN3Q75N90 2809 aa7.4□□□□□ -1.23
SF3A1-207ENST00000471342 UMAD1C9J7I0 102 aa7.39□□□□□ -1.23
SF3A1-207ENST00000471342 SNRPCP09234 159 aaKnown RBP7.39□□□□□ -1.23
SF3A1-207ENST00000471342 IGLL1P15814 213 aa7.39□□□□□ -1.23
SF3A1-207ENST00000471342 KRTAP10-11P60412 298 aa7.39□□□□□ -1.23
SF3A1-207ENST00000471342 RAB31Q13636 194 aa7.39□□□□□ -1.23
SF3A1-207ENST00000471342 PMS2P11Q13670 270 aa7.39□□□□□ -1.23
SF3A1-207ENST00000471342 BEAN1Q3B7T3 259 aa7.39□□□□□ -1.23
SF3A1-207ENST00000471342 ACOT6Q3I5F7 207 aaPredicted RBP7.39□□□□□ -1.23
SF3A1-207ENST00000471342 ELOVL1Q9BW60 279 aa7.39□□□□□ -1.23
SF3A1-207ENST00000471342 MRPL32Q9BYC8 188 aaKnown RBP7.39□□□□□ -1.23
SF3A1-207ENST00000471342 PRKDCP78527 4128 aaKnown RBP7.39□□□□□ -1.23
SF3A1-207ENST00000471342 CTXND1A0A1B0GTU2 59 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 H3BTX0 84 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 K7EQG2 157 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 COX7A2P2O60397 106 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 HLA-DMBP28068 263 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 GCHFRP30047 84 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 CDC34P49427 236 aaPredicted RBP7.38□□□□□ -1.23
SF3A1-207ENST00000471342 FGF8P55075 233 aaPredicted RBP7.38□□□□□ -1.23
SF3A1-207ENST00000471342 EGFEM1PQ0D2K5 195 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 SAMD5Q5TGI4 173 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 IGFL4Q6B9Z1 124 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 DPPA3Q6W0C5 159 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 SIGLEC15Q6ZMC9 328 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 Q6ZRG5 221 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 CCDC28AQ8IWP9 274 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 ZNF709Q8N972 641 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 OR1L4Q8NGR5 311 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 METTL26Q96S19 204 aa7.38□□□□□ -1.23
SF3A1-207ENST00000471342 YTHDF2Q9Y5A9 579 aaKnown RBP7.38□□□□□ -1.23
SF3A1-207ENST00000471342 HUWE1Q7Z6Z7 4374 aaKnown RBP7.38□□□□□ -1.23
SF3A1-207ENST00000471342 MGAM2Q2M2H8 2515 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 TRBV19A0A075B6N1 114 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 C9JQL5 133 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 TSPAN4O14817 238 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 MBP02144 154 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 FABP1P07148 127 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 ARL14EPLP0DKL9 152 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 HIST1H1EP10412 219 aaKnown RBP7.37□□□□□ -1.23
SF3A1-207ENST00000471342 DEFB1P60022 68 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 EIF5AP63241 154 aaKnown RBP7.37□□□□□ -1.23
SF3A1-207ENST00000471342 OXLD1Q5BKU9 147 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 LCN15Q6UWW0 184 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 Q8N1Y9 231 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 FAM213BQ8TBF2 198 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 MARC2Q969Z3 335 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 CITED4Q96RK1 184 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 PFDN5Q99471 154 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 HRH4Q9H3N8 390 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 KCNIP2Q9NS61 270 aa7.37□□□□□ -1.23
SF3A1-207ENST00000471342 GGTLC3B5MD39 225 aa7.36□□□□□ -1.23
SF3A1-207ENST00000471342 OR10J4P0C629 311 aa7.36□□□□□ -1.23
SF3A1-207ENST00000471342 PRB4P10163 310 aaPredicted RBP7.36□□□□□ -1.23
SF3A1-207ENST00000471342 RAB5CP51148 216 aa7.36□□□□□ -1.23
SF3A1-207ENST00000471342 RHOBP62745 196 aa7.36□□□□□ -1.23
SF3A1-207ENST00000471342 SRSF3P84103 164 aaKnown RBP7.36□□□□□ -1.23
SF3A1-207ENST00000471342 AKR1C8PQ5T2L2 129 aa7.36□□□□□ -1.23
SF3A1-207ENST00000471342 KPRPQ5T749 579 aaPredicted RBP7.36□□□□□ -1.23
SF3A1-207ENST00000471342 TCF24Q7RTU0 167 aa7.36□□□□□ -1.23
SF3A1-207ENST00000471342 RNF141Q8WVD5 230 aa7.36□□□□□ -1.23
SF3A1-207ENST00000471342 ACTR3CQ9C0K3 210 aaPredicted RBP7.36□□□□□ -1.23
SF3A1-207ENST00000471342 MS4A6AQ9H2W1 248 aa7.36□□□□□ -1.23
SF3A1-207ENST00000471342 OR51M1Q9H341 326 aa7.36□□□□□ -1.23
SF3A1-207ENST00000471342 ZNF331Q9NQX6 463 aaPredicted RBP7.36□□□□□ -1.23
SF3A1-207ENST00000471342 MAP1LC3B2A6NCE7 125 aa7.35□□□□□ -1.23
SF3A1-207ENST00000471342 PRAC2D3DTV9 90 aa7.35□□□□□ -1.23
SF3A1-207ENST00000471342 G3V4G9 280 aa7.35□□□□□ -1.23
SF3A1-207ENST00000471342 M0QZ24 198 aa7.35□□□□□ -1.23
SF3A1-207ENST00000471342 PF4P02776 101 aa7.35□□□□□ -1.23
SF3A1-207ENST00000471342 NBEAP1P0C6P0 100 aa7.35□□□□□ -1.23
SF3A1-207ENST00000471342 ODF3L2Q3SX64 289 aa7.35□□□□□ -1.23
SF3A1-207ENST00000471342 CLLU1Q5K131 121 aa7.35□□□□□ -1.23
SF3A1-207ENST00000471342 PQLC2Q6ZP29 291 aa7.35□□□□□ -1.23
SF3A1-207ENST00000471342 MAP1LC3BQ9GZQ8 125 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms