RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 M0QZ24 198 aa15.04■□□□□ -0
VIM-203ENST00000469543 HLA-DQA1P01909 254 aa15.04■□□□□ -0
VIM-203ENST00000469543 PRTN3P24158 256 aa15.04■□□□□ -0
VIM-203ENST00000469543 LINC00469Q8N7U9 141 aa15.04■□□□□ -0
VIM-203ENST00000469543 C18orf32Q8TCD1 76 aa15.04■□□□□ -0
VIM-203ENST00000469543 NOL4LQ96MY1 436 aaPredicted RBP15.04■□□□□ -0
VIM-203ENST00000469543 NRN1Q9NPD7 142 aa15.04■□□□□ -0
VIM-203ENST00000469543 ZNF785A8K8V0 405 aa15.03■□□□□ -0
VIM-203ENST00000469543 LTAP01374 205 aa15.03■□□□□ -0
VIM-203ENST00000469543 IGLV2-11P01706 119 aa15.03■□□□□ -0
VIM-203ENST00000469543 HIST1H1EP10412 219 aaKnown RBP15.03■□□□□ -0
VIM-203ENST00000469543 FOXA3P55318 350 aaPredicted RBP15.03■□□□□ -0
VIM-203ENST00000469543 SSTP61278 116 aa15.03■□□□□ -0
VIM-203ENST00000469543 FANCD2OSQ96PS1 177 aa15.03■□□□□ -0
VIM-203ENST00000469543 UQCRFS1P47985 274 aa15.03■□□□□ -0
VIM-203ENST00000469543 RPL19P84098 196 aaKnown RBP15.03■□□□□ -0
VIM-203ENST00000469543 C5orf64Q2M2E5 130 aa15.03■□□□□ -0
VIM-203ENST00000469543 ODF3BA8MYP8 253 aa15.02■□□□□ -0
VIM-203ENST00000469543 TOMM40O96008 361 aa15.02■□□□□ -0
VIM-203ENST00000469543 C1orf194Q5T5A4 169 aa15.02■□□□□ -0
VIM-203ENST00000469543 SH2D7A6NKC9 451 aaPredicted RBP15.02□□□□□ -0.01
VIM-203ENST00000469543 UCNP55089 124 aa15.02□□□□□ -0.01
VIM-203ENST00000469543 LPAR2Q9HBW0 351 aa15.02□□□□□ -0.01
VIM-203ENST00000469543 FAM120AOSQ5T036 256 aa15.01□□□□□ -0.01
VIM-203ENST00000469543 RNF125Q96EQ8 232 aa15.01□□□□□ -0.01
VIM-203ENST00000469543 UBTD1Q9HAC8 227 aa15.01□□□□□ -0.01
VIM-203ENST00000469543 P01737 135 aa15.01□□□□□ -0.01
VIM-203ENST00000469543 OR10J3Q5JRS4 329 aa15.01□□□□□ -0.01
VIM-203ENST00000469543 RNF5Q99942 180 aa15.01□□□□□ -0.01
VIM-203ENST00000469543 F8W735 103 aaPredicted RBP15□□□□□ -0.01
VIM-203ENST00000469543 CEACAM3P40198 252 aa15□□□□□ -0.01
VIM-203ENST00000469543 PMCHL1Q16048 86 aa15□□□□□ -0.01
VIM-203ENST00000469543 IGFL4Q6B9Z1 124 aa15□□□□□ -0.01
VIM-203ENST00000469543 Q8N976 141 aa15□□□□□ -0.01
VIM-203ENST00000469543 NPBQ8NG41 125 aa15□□□□□ -0.01
VIM-203ENST00000469543 KCNS1Q96KK3 526 aa15□□□□□ -0.01
VIM-203ENST00000469543 PRSS22Q9GZN4 317 aa15□□□□□ -0.01
VIM-203ENST00000469543 RPP21Q9H633 154 aaKnown RBP15□□□□□ -0.01
VIM-203ENST00000469543 GNG7O60262 68 aa15□□□□□ -0.01
VIM-203ENST00000469543 NDUFA3O95167 84 aa15□□□□□ -0.01
VIM-203ENST00000469543 NIT1Q86X76 327 aa15□□□□□ -0.01
VIM-203ENST00000469543 ATOH7Q8N100 152 aa15□□□□□ -0.01
VIM-203ENST00000469543 USP9XQ93008 2570 aaPredicted RBP15□□□□□ -0.01
VIM-203ENST00000469543 C19orf71A6NCJ1 209 aa15□□□□□ -0.01
VIM-203ENST00000469543 OR2T8A6NH00 312 aa15□□□□□ -0.01
VIM-203ENST00000469543 OR2J3O76001 311 aa15□□□□□ -0.01
VIM-203ENST00000469543 LCN12Q6JVE5 192 aa15□□□□□ -0.01
VIM-203ENST00000469543 FMC1Q96HJ9 113 aa15□□□□□ -0.01
VIM-203ENST00000469543 SHANK2-AS3Q9BTD1 123 aa15□□□□□ -0.01
VIM-203ENST00000469543 SNHG12Q9BXW3 62 aa15□□□□□ -0.01
VIM-203ENST00000469543 ZFYVE26Q68DK2 2539 aa14.99□□□□□ -0.01
VIM-203ENST00000469543 TRBV19A0A075B6N1 114 aa14.99□□□□□ -0.01
VIM-203ENST00000469543 C19orf84I3L1E1 186 aa14.99□□□□□ -0.01
VIM-203ENST00000469543 ZNF324O75467 553 aaPredicted RBP14.99□□□□□ -0.01
VIM-203ENST00000469543 MYO18BQ8IUG5 2567 aa14.99□□□□□ -0.01
VIM-203ENST00000469543 IGSF10Q6WRI0 2623 aa14.99□□□□□ -0.01
VIM-203ENST00000469543 NDUFB8O95169 186 aa14.99□□□□□ -0.01
VIM-203ENST00000469543 COL8A1P27658 744 aa14.99□□□□□ -0.01
VIM-203ENST00000469543 ZNF705AQ6ZN79 300 aaPredicted RBP14.99□□□□□ -0.01
VIM-203ENST00000469543 Q86TA4 180 aa14.99□□□□□ -0.01
VIM-203ENST00000469543 HOXB4P17483 251 aaPredicted RBP14.98□□□□□ -0.01
VIM-203ENST00000469543 PAX2Q02962 417 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 MAJINQ3KP22 176 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 NEU4Q8WWR8 484 aaPredicted RBP14.98□□□□□ -0.01
VIM-203ENST00000469543 ARPC1AQ92747 370 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 ZC2HC1AQ96GY0 325 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 DIRC3C9JPN6 131 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 M0R1W7 72 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 IGLC2P0DOY2 106 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 Q56UQ5 140 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 ZNF562Q6V9R5 426 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 BPIFA4PQ86YQ2 179 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 DAZAP1Q96EP5 407 aaKnown RBP14.98□□□□□ -0.01
VIM-203ENST00000469543 ALKBH7Q9BT30 221 aaPredicted RBP14.98□□□□□ -0.01
VIM-203ENST00000469543 OTORQ9NRC9 128 aa14.98□□□□□ -0.01
VIM-203ENST00000469543 CACNA1AO00555 2505 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.97□□□□□ -0.011e-6■■■■■ 28.8
VIM-203ENST00000469543 KIR2DL5BA0A0G2JN68 375 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 KIR2DL5BA0A0G2JPC4 375 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 C3orf79P0CE67 100 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 SIGLEC15Q6ZMC9 328 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 KIR2DL5AQ8N109 375 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 WIPF2Q8TF74 440 aaPredicted RBP14.97□□□□□ -0.01
VIM-203ENST00000469543 IGLV11-55A0A075B6I3 123 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 A0A1B0GXF2 115 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 LINC01548A6NM66 108 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 TEX43Q6ZNM6 134 aa14.97□□□□□ -0.01
VIM-203ENST00000469543 H3BRN7 92 aa14.96□□□□□ -0.01
VIM-203ENST00000469543 EGR2P11161 476 aaPredicted RBP14.96□□□□□ -0.01
VIM-203ENST00000469543 ZNF138P52744 262 aa14.96□□□□□ -0.01
VIM-203ENST00000469543 RNASEKQ6P5S7 137 aaKnown RBP14.96□□□□□ -0.01
VIM-203ENST00000469543 TMEM14CQ9P0S9 112 aa14.96□□□□□ -0.01
VIM-203ENST00000469543 CRIP1P50238 77 aa14.96□□□□□ -0.02
VIM-203ENST00000469543 URB1-AS1Q96HZ7 61 aa14.96□□□□□ -0.02
VIM-203ENST00000469543 ZNF414Q96IQ9 312 aa14.96□□□□□ -0.02
VIM-203ENST00000469543 CHRDL1Q9BU40 450 aa14.96□□□□□ -0.02
VIM-203ENST00000469543 ABCA2Q9BZC7 2435 aa14.95□□□□□ -0.02
VIM-203ENST00000469543 MRPS12O15235 138 aaKnown RBP14.95□□□□□ -0.02
VIM-203ENST00000469543 HLA-DRB1P01911 266 aa14.95□□□□□ -0.02
VIM-203ENST00000469543 TMEM11P17152 192 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms