RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 OR2F1Q13607 317 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 KLF9Q13886 244 aaPredicted RBP5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 SP6Q3SY56 376 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 SNX29P2Q8IUI4 249 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 ARRDC1Q8N5I2 433 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 OR52E5Q8NH55 327 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 RRNAD1Q96FB5 475 aaKnown RBP5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 NAA50Q9GZZ1 169 aaKnown RBP5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 SLC25A32Q9H2D1 315 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 TMPRSS5Q9H3S3 457 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 MSRB1Q9NZV6 116 aa5.24□□□□□ -1.57
LIMCH1-204ENST00000446625 C3orf85A0A1B0GTC6 90 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 CEBPZOSA8MTT3 80 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 SNRPGP15A8MWD9 76 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 NPIPB6E9PJ23 425 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 RLN2P04090 185 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 PRB4P10163 310 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 PRSS3P35030 304 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 GALR1P47211 349 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 PIGPP57054 158 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 RHOBP62745 196 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 HIST1H1AQ02539 215 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 GAMTQ14353 236 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 TRIM16LQ309B1 348 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 UBE2NLQ5JXB2 153 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 GPR107Q5VW38 600 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 CLVS1Q8IUQ0 354 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 ZNF738Q8NE65 137 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 RNASE11Q8TAA1 199 aaKnown RBP5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 S100A16Q96FQ6 103 aaKnown RBP5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 FUNDC2Q9BWH2 189 aa5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-204ENST00000446625 LRCOL1A6NCL2 159 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 ZNF98A6NK75 572 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 H7BYZ3 331 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 GABARAPO95166 117 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 RCVRNP35243 200 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 TMBIM6P55061 237 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 KIR3DS1Q14943 382 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 CTF1Q16619 201 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 NMSQ5H8A3 153 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 Q6ZTI0 123 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 NTN5Q8WTR8 489 aaPredicted RBP5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 BCL7BQ9BQE9 202 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 SLC25A22Q9H936 323 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 PPP1R14DQ9NXH3 145 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 CACNG5Q9UF02 275 aa5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 RSL24D1Q9UHA3 163 aaKnown RBP5.22□□□□□ -1.57
LIMCH1-204ENST00000446625 TRAV9-2A0A087WT02 112 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 A6NJY4 79 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 SNURFLB1AK76 121 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 H3BMQ9 156 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 C1QBP02746 253 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 RPS19P39019 145 aaKnown RBP5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 CDKN1BP46527 198 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 KRTAP10-4P60372 401 aaPredicted RBP5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 FGL1Q08830 312 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 MEF2DQ14814 521 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 CNPY1Q3B7I2 92 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 LYPD5Q6UWN5 251 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 NOXA1Q86UR1 476 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 FAM219AQ8IW50 185 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 CCDC28AQ8IWP9 274 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 OR8A1Q8NGG7 326 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 LHFPL5Q8TAF8 219 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 GPX8Q8TED1 209 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 RAB2BQ8WUD1 216 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 ZNF486Q96H40 463 aaPredicted RBP5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 LINC00467Q9BRT7 94 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 COMMD3Q9UBI1 195 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 LY96Q9Y6Y9 160 aa5.21□□□□□ -1.58
LIMCH1-204ENST00000446625 IGKV1OR2-108A0A075B7D4 117 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 CCDC160A6NGH7 325 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 FABP1P07148 127 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 OR5AC1P0C628 307 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 NCS1P62166 190 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 Q6ZSA8 131 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 LHFPL1Q86WI0 220 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 WFDC10BQ8IUB3 73 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 OR4D5Q8NGN0 318 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 OR1B1Q8NGR6 318 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 IL22RA2Q969J5 263 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 SLC35E1Q96K37 410 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 TRGV9Q99603 122 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 PARD6GQ9BYG4 376 aaPredicted RBP5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 COPZ2Q9P299 210 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 ICOSQ9Y6W8 199 aa5.2□□□□□ -1.58
LIMCH1-204ENST00000446625 TNXBP22105 4242 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 TRGV2A0A075B6R0 118 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 GABARAPH6UMI1 98 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 PAX4O43316 350 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 PSCAO43653 123 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 HPGDSO60760 199 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 CDS2O95674 445 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 EVI2AP22794 236 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 GPX4P36969 197 aaPredicted RBP5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 VBP1P61758 197 aa5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 DAZ2Q13117 558 aaKnown RBP5.19□□□□□ -1.58
LIMCH1-204ENST00000446625 SPCS2Q15005 226 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms