RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 C4orf33Q8N1A6 199 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 C9orf62Q8N4C0 152 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 LINC00311Q8N616 119 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 SMCR5Q8TEV8 140 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 ELSPBP1Q96BH3 223 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 DPH3Q96FX2 82 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 SMDT1Q9H4I9 107 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 NAA60Q9H7X0 242 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 RPRMQ9NS64 109 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 OR5V1Q9UGF6 321 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 U3KQK5 164 aa2.94□□□□□ -1.94
VPS50-206ENST00000443443 PTPRTO14522 1441 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 A0A0J9YW62 118 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 PINLYPA6NC86 204 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 MSMBP08118 114 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 CCL5P13501 91 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 TPT1P13693 172 aaKnown RBP2.93□□□□□ -1.94
VPS50-206ENST00000443443 NFYAP23511 347 aaPredicted RBP2.93□□□□□ -1.94
VPS50-206ENST00000443443 CATR1Q13166 79 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 LINC01545Q5VT33 79 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 SOSTDC1Q6X4U4 206 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 AAED1Q7RTV5 226 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 SVBPQ8N300 66 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 LINC00574Q9H8X3 128 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 SAR1AQ9NR31 198 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 METTL1Q9UBP6 276 aaKnown RBP2.93□□□□□ -1.94
VPS50-206ENST00000443443 ZFYVE16Q7Z3T8 1539 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 NSD3Q9BZ95 1437 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 ARID1AO14497 2285 aa2.93□□□□□ -1.94
VPS50-206ENST00000443443 PIK3C2AO00443 1686 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 A2ML1A8K2U0 1454 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 CCDC18Q5T9S5 1454 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 KTN1Q86UP2 1357 aaKnown RBP2.92□□□□□ -1.94
VPS50-206ENST00000443443 ZNFX1Q9P2E3 1918 aaKnown RBP2.92□□□□□ -1.94
VPS50-206ENST00000443443 TRAV12-2A0A075B6T6 113 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 TRBV6-6A0A0A6YYG2 114 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 C19orf71A6NCJ1 209 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 M0R129 80 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 SDCBPO00560 298 aaPredicted RBP2.92□□□□□ -1.94
VPS50-206ENST00000443443 SYNGR2O43760 224 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 YPEL1O60688 119 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 KLF7O75840 302 aaPredicted RBP2.92□□□□□ -1.94
VPS50-206ENST00000443443 LHBP01229 141 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 RBP4P02753 201 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 MDKP21741 143 aaPredicted RBP2.92□□□□□ -1.94
VPS50-206ENST00000443443 BRS3P32247 399 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 MRPS36P82909 103 aaKnown RBP2.92□□□□□ -1.94
VPS50-206ENST00000443443 KLRD1Q13241 179 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 DEFB116Q30KQ4 102 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 CLLU1Q5K131 121 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 MRPL54Q6P161 138 aaKnown RBP2.92□□□□□ -1.94
VPS50-206ENST00000443443 Q6ZQT7 251 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 C5orf17Q8NAS9 161 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 PFN4Q8NHR9 129 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 DIRC1Q969H9 104 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 DLC1Q96QB1 1528 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 UBR2Q8IWV8 1755 aa2.92□□□□□ -1.94
VPS50-206ENST00000443443 FOCADQ5VW36 1801 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 TRBV20-1A0A075B6N2 111 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 A0A0D9SG52 128 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 A0A1W2PQD3 144 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 H3BT86 120 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 PMP2P02689 132 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 CD2P06729 351 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 SPINK8P0C7L1 97 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 ZNF705BP0CI00 300 aaPredicted RBP2.91□□□□□ -1.94
VPS50-206ENST00000443443 IFITM1P13164 125 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 XCL1P47992 114 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 DYNLT1P63172 113 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 CDK5R1Q15078 307 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 RPRMLQ8N4K4 120 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 FAM216BQ8N7L0 139 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 SPANXA2-OT1Q8N9U9 137 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 IMMP2LQ96T52 175 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 NOP16Q9Y3C1 178 aaKnown RBP2.91□□□□□ -1.94
VPS50-206ENST00000443443 TET2Q6N021 2002 aaPredicted RBP2.91□□□□□ -1.94
VPS50-206ENST00000443443 RGS12O14924 1447 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 PIKFYVEQ9Y2I7 2098 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 ATAD5Q96QE3 1844 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 OTOFQ9HC10 1997 aa2.91□□□□□ -1.94
VPS50-206ENST00000443443 BAZ1BQ9UIG0 1483 aaKnown RBP2.9□□□□□ -1.94
VPS50-206ENST00000443443 MAPKBP1O60336 1514 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 IGKV1OR2-108A0A075B7D4 117 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 A0A096LNJ9 63 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 PANO1I0J062 215 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 GEMIN2O14893 280 aaKnown RBP2.9□□□□□ -1.95
VPS50-206ENST00000443443 MPC2O95563 127 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 CD24P25063 80 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 ZNF90Q03938 601 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 Q56UQ5 140 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 PABPC1L2AQ5JQF8 200 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 Q6ZR03 302 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 C2orf91Q6ZV80 131 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 TTC9CQ8N5M4 171 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 CYB561D1Q8N8Q1 229 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 RNF5Q99942 180 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 SLC35B3Q9H1N7 401 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 DNAJC15Q9Y5T4 150 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 KIAA1107Q9UPP5 1409 aa2.9□□□□□ -1.95
VPS50-206ENST00000443443 FER1L6Q2WGJ9 1857 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms