RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 EMX2Q04743 252 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 FOXF1Q12946 379 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 KLRD1Q13241 179 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 PYDC2Q56P42 97 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 TMEM14EPQ6UXP3 125 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 LINC00471Q8N535 108 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 OR4C6Q8NH72 309 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 AQP3Q92482 292 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 BANF2Q9H503 90 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 DSPPQ9NZW4 1301 aa2.84□□□□□ -1.96
CCDC88A-206ENST00000430086 TRPM3Q9HCF6 1732 aaPredicted RBP2.84□□□□□ -1.96
CCDC88A-206ENST00000430086 RTL9Q8NET4 1388 aa2.84□□□□□ -1.96
CCDC88A-206ENST00000430086 XIRP1Q702N8 1843 aaKnown RBP2.84□□□□□ -1.96
CCDC88A-206ENST00000430086 MYH11P35749 1972 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 SMARCA2P51531 1590 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 PIK3C2AO00443 1686 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 LYRM1O43325 122 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 GNG7O60262 68 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 PGLYRP1O75594 196 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 CRYGSP22914 178 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 HINT1P49773 126 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 RAB5CP51148 216 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 TMEM258P61165 79 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 MRPS10P82664 201 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 ZNF90Q03938 601 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 TMEM155Q4W5P6 130 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 LCN15Q6UWW0 184 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 C7orf65Q6ZTY9 151 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 NAT14Q8WUY8 206 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 ZC2HC1AQ96GY0 325 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 GGACTQ9BVM4 153 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 NUP210Q8TEM1 1887 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 DOCK4Q8N1I0 1966 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 ADGRL1O94910 1474 aa2.83□□□□□ -1.96
CCDC88A-206ENST00000430086 RIMBP3CA6NJZ7 1639 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 RIMBP3BA6NNM3 1639 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 RIMBP3Q9UFD9 1639 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 DENND4CQ5VZ89 1909 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 G3V3Q6 166 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 LY6LH3BQJ8 138 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 UQCRQO14949 82 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 TRGC1P0CF51 173 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 TPT1P13693 172 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 KDELR1P24390 212 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 GUCA1AP43080 201 aaPredicted RBP2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 MRPS36P82909 103 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 RELAQ04206 551 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 SPANXN5Q5MJ07 72 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 FAM216BQ8N7L0 139 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 MORN4Q8NDC4 146 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 NDUFB11Q9NX14 153 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 TAS2R4Q9NYW5 299 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 GNG8Q9UK08 70 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 TNFSF18Q9UNG2 199 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 PTPRGP23470 1445 aa2.82□□□□□ -1.96
CCDC88A-206ENST00000430086 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 HMSDA8MTL9 139 aa2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 CRYGAP11844 174 aa2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 DEFA4P12838 97 aa2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 QRFPP83859 136 aa2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 ERHP84090 104 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 DEFB134Q4QY38 66 aa2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 PSORS1C2Q9UIG4 136 aa2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 LY96Q9Y6Y9 160 aa2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 IBTKQ9P2D0 1353 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 CACNA1SQ13698 1873 aa2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 ZNF407Q9C0G0 2248 aa2.81□□□□□ -1.96
CCDC88A-206ENST00000430086 FAM135AQ9P2D6 1515 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 ZNF518AQ6AHZ1 1483 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 OR51F1A6NGY5 319 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 ATP6V1G2-DDX39BF2Z307 99 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 NPFFO15130 113 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 KRTAP5-8O75690 187 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 PROSCO94903 275 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 IGLC6P0CF74 106 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 MAXP61244 160 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 TAF9Q16594 264 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 ESRGQ1W209 222 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 IDO2Q6ZQW0 420 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 C3orf56Q8N813 242 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 OR10AC1Q8NH08 325 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 DIRC1Q969H9 104 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 CHCHD1Q96BP2 118 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 C12orf57Q99622 126 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 PDCD10Q9BUL8 212 aa2.8□□□□□ -1.96
CCDC88A-206ENST00000430086 OBSL1O75147 1896 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 NAIPQ13075 1403 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 TNS3Q68CZ2 1445 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 PRG4Q92954 1404 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 C17orf112F2Z3M2 114 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 PMP2P02689 132 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 TCRAP04437 139 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 LINC00694P0DN24 101 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 HIST1H1BP16401 226 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 FOXA3P55318 350 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 CDK5R1Q15078 307 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 IGFBP7Q16270 282 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 HAGHLQ6PII5 290 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 PATE2Q6UY27 113 aa2.79□□□□□ -1.96
CCDC88A-206ENST00000430086 TAF9BQ9HBM6 251 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms