RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 IGKV1-16P04430 117 aa10.42□□□□□ -0.74
PTCH1-207ENST00000429896 TCF23Q7RTU1 214 aa10.42□□□□□ -0.74
PTCH1-207ENST00000429896 Q8NFD4 153 aa10.42□□□□□ -0.74
PTCH1-207ENST00000429896 Q9H3A6 140 aa10.42□□□□□ -0.74
PTCH1-207ENST00000429896 SDF2L1Q9HCN8 221 aa10.42□□□□□ -0.74
PTCH1-207ENST00000429896 NCOR2Q9Y618 2525 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 CNTFRP26992 372 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 PET117Q6UWS5 81 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 VGLL1Q99990 258 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 KMT2EQ8IZD2 1858 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 C8orf31Q8N9H6 132 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 TRBV7-1A0A0A6YYK4 115 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 INTS1Q8N201 2190 aaKnown RBP10.41□□□□□ -0.74
PTCH1-207ENST00000429896 TRGV4A0A0C4DH28 118 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 SAMD13Q5VXD3 122 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 ZGRF1Q86YA3 2104 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 TRAV21A0A0B4J279 112 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 PRSS57Q6UWY2 283 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 TMEM144Q7Z5S9 345 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 RNASE7Q9H1E1 156 aaKnown RBP10.41□□□□□ -0.74
PTCH1-207ENST00000429896 VPREB3Q9UKI3 123 aa10.41□□□□□ -0.74
PTCH1-207ENST00000429896 TNRC6AQ8NDV7 1962 aaKnown RBP10.4□□□□□ -0.74
PTCH1-207ENST00000429896 IGHV4-38-2P0DP08 117 aa10.4□□□□□ -0.74
PTCH1-207ENST00000429896 LCNL1Q6ZST4 164 aa10.4□□□□□ -0.74
PTCH1-207ENST00000429896 OR10J3Q5JRS4 329 aa10.4□□□□□ -0.74
PTCH1-207ENST00000429896 ZNF562Q6V9R5 426 aa10.4□□□□□ -0.74
PTCH1-207ENST00000429896 UQCR10Q9UDW1 63 aa10.4□□□□□ -0.74
PTCH1-207ENST00000429896 SRSF8Q9BRL6 282 aaKnown RBP10.4□□□□□ -0.74
PTCH1-207ENST00000429896 NBASA2RRP1 2371 aa10.4□□□□□ -0.74
PTCH1-207ENST00000429896 ATP6V0E1O15342 81 aa10.4□□□□□ -0.74
PTCH1-207ENST00000429896 GTSCR1Q86UQ5 136 aa10.4□□□□□ -0.74
PTCH1-207ENST00000429896 OR11H6Q8NGC7 330 aa10.4□□□□□ -0.74
PTCH1-207ENST00000429896 FGF16O43320 207 aa10.4□□□□□ -0.75
PTCH1-207ENST00000429896 IGKV1-5P01602 117 aa10.4□□□□□ -0.75
PTCH1-207ENST00000429896 PSMG3Q9BT73 122 aaPredicted RBP10.4□□□□□ -0.75
PTCH1-207ENST00000429896 SRSF4Q08170 494 aaKnown RBP10.39□□□□□ -0.75
PTCH1-207ENST00000429896 SPSB3Q6PJ21 355 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 ASCL2Q99929 193 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 HEATR1Q9H583 2144 aaKnown RBP10.39□□□□□ -0.75
PTCH1-207ENST00000429896 A0A1B0GV90 55 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 MT-ND6P03923 174 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 RNF125Q96EQ8 232 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 CENPVL3A0A0U1RRI6 287 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 ZNF98A6NK75 572 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 ZFP36P26651 326 aaKnown RBP10.39□□□□□ -0.75
PTCH1-207ENST00000429896 RNF166Q96A37 237 aaPredicted RBP10.39□□□□□ -0.75
PTCH1-207ENST00000429896 HOXA5P20719 270 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 ID3Q02535 119 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 OR11H12B2RN74 326 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 IGHV4-59P01825 116 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 CRPP02741 224 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 OR11H1Q8NG94 326 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 OR11H2Q8NH07 326 aa10.39□□□□□ -0.75
PTCH1-207ENST00000429896 LINC00614P0C842 121 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 CDSNQ15517 529 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 OR9G4Q8NGQ1 327 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 BBC3Q96PG8 261 aaPredicted RBP10.38□□□□□ -0.75
PTCH1-207ENST00000429896 KLF17Q5JT82 389 aaPredicted RBP10.38□□□□□ -0.75
PTCH1-207ENST00000429896 COPS9Q8WXC6 57 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 ANAPC10Q9UM13 185 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 H0YIZ8 118 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 TMEM50AO95807 157 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 FAM110DQ8TAY7 271 aaPredicted RBP10.38□□□□□ -0.75
PTCH1-207ENST00000429896 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.38□□□□□ -0.75
PTCH1-207ENST00000429896 ZNF134P52741 427 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 FER1L6-AS1Q8NA97 138 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 WFDC11Q8NEX6 87 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 TRAV2A0A0B4J234 112 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 PYYP10082 97 aa10.38□□□□□ -0.75
PTCH1-207ENST00000429896 LSM4Q9Y4Z0 139 aaKnown RBP10.37□□□□□ -0.75
PTCH1-207ENST00000429896 SUPT4H1P63272 117 aaKnown RBP10.37□□□□□ -0.75
PTCH1-207ENST00000429896 GZMBP10144 247 aa10.37□□□□□ -0.75
PTCH1-207ENST00000429896 ICE1Q9Y2F5 2266 aa10.37□□□□□ -0.75
PTCH1-207ENST00000429896 DIAPH2-AS1Q14236 149 aa10.37□□□□□ -0.75
PTCH1-207ENST00000429896 OR5A1Q8NGJ0 315 aa10.37□□□□□ -0.75
PTCH1-207ENST00000429896 PEF1Q9UBV8 284 aaKnown RBP10.37□□□□□ -0.75
PTCH1-207ENST00000429896 PSMG4Q5JS54 123 aa10.37□□□□□ -0.75
PTCH1-207ENST00000429896 C11orf71Q6IPW1 123 aa10.37□□□□□ -0.75
PTCH1-207ENST00000429896 NXT2Q9NPJ8 142 aaKnown RBP10.37□□□□□ -0.75
PTCH1-207ENST00000429896 RPRMQ9NS64 109 aa10.37□□□□□ -0.75
PTCH1-207ENST00000429896 PTPRQQ9UMZ3 2332 aa10.37□□□□□ -0.75
PTCH1-207ENST00000429896 SAPCD1Q5SSQ6 148 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 TMEM183AQ8IXX5 376 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 NDPQ00604 133 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 ATRAIDQ6UW56 229 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 A0A1B0GWB2 263 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 H7C1H1 209 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 HIST1H2BAQ96A08 127 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 TP53BP1Q12888 1972 aaPredicted RBP10.36□□□□□ -0.75
PTCH1-207ENST00000429896 RBMY1BA6NDE4 496 aaKnown RBP10.36□□□□□ -0.75
PTCH1-207ENST00000429896 RBMY1EA6NEQ0 496 aaKnown RBP10.36□□□□□ -0.75
PTCH1-207ENST00000429896 H3BRM9 83 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 RBMY1DP0C7P1 496 aaKnown RBP10.36□□□□□ -0.75
PTCH1-207ENST00000429896 RBMY1A1P0DJD3 496 aaKnown RBP10.36□□□□□ -0.75
PTCH1-207ENST00000429896 RBMY1CP0DJD4 496 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 PAX1P15863 534 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 NMSQ5H8A3 153 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 A0A1B0GWJ7 208 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 LINC00518Q8N0U6 118 aa10.36□□□□□ -0.75
PTCH1-207ENST00000429896 RCC1LQ96I51 464 aaKnown RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms