RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 Q9H3A6 140 aa12.85□□□□□ -0.35
C9orf3-206ENST00000428313 RANBP2P49792 3224 aaKnown RBP12.85□□□□□ -0.35
C9orf3-206ENST00000428313 SAA2P0DJI9 122 aaPredicted RBP12.85□□□□□ -0.35
C9orf3-206ENST00000428313 HOXB4P17483 251 aaPredicted RBP12.85□□□□□ -0.35
C9orf3-206ENST00000428313 ODF1Q14990 250 aa12.85□□□□□ -0.35
C9orf3-206ENST00000428313 C3AR1Q16581 482 aa12.85□□□□□ -0.35
C9orf3-206ENST00000428313 SLC25A45Q8N413 288 aa12.85□□□□□ -0.35
C9orf3-206ENST00000428313 OBP2BQ9NPH6 170 aa12.85□□□□□ -0.35
C9orf3-206ENST00000428313 PRRG2O14669 202 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 MPV17P39210 176 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 HERV-K104P63124 156 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 FHL3Q13643 280 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 FAM104BQ5XKR9 115 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 ZFAND6Q6FIF0 208 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 CXorf67Q86X51 503 aaPredicted RBP12.84□□□□□ -0.35
C9orf3-206ENST00000428313 CD177Q8N6Q3 437 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 MRPS17Q9Y2R5 130 aaKnown RBP12.84□□□□□ -0.35
C9orf3-206ENST00000428313 PCSK5Q92824 1860 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 VCANP13611 3396 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 TANC2Q9HCD6 1990 aa12.84□□□□□ -0.35
C9orf3-206ENST00000428313 IGKCP01834 107 aa12.83□□□□□ -0.35
C9orf3-206ENST00000428313 GP9P14770 177 aa12.83□□□□□ -0.35
C9orf3-206ENST00000428313 ERHP84090 104 aaKnown RBP12.83□□□□□ -0.35
C9orf3-206ENST00000428313 C1orf122Q6ZSJ8 110 aa12.83□□□□□ -0.35
C9orf3-206ENST00000428313 OTORQ9NRC9 128 aa12.83□□□□□ -0.35
C9orf3-206ENST00000428313 B5MCH6 92 aa12.83□□□□□ -0.36
C9orf3-206ENST00000428313 LINC01619G3V211 115 aa12.83□□□□□ -0.36
C9orf3-206ENST00000428313 PLAUP00749 431 aa12.83□□□□□ -0.36
C9orf3-206ENST00000428313 IGLV2-11P01706 119 aa12.83□□□□□ -0.36
C9orf3-206ENST00000428313 TTTY13Q9BZ97 58 aa12.83□□□□□ -0.36
C9orf3-206ENST00000428313 TMEM133Q9H2Q1 129 aa12.83□□□□□ -0.36
C9orf3-206ENST00000428313 LINC01546A6NGU7 62 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 NFE4Q86UQ8 179 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 ZCCHC24Q8N2G6 241 aaKnown RBP12.82□□□□□ -0.36
C9orf3-206ENST00000428313 PPDPFLQ8WWR9 84 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 NPIPB3Q92617 1050 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 UFC1Q9Y3C8 167 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 PRDX2P32119 198 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 SMCPP49901 116 aaPredicted RBP12.82□□□□□ -0.36
C9orf3-206ENST00000428313 HOXA4Q00056 320 aaPredicted RBP12.82□□□□□ -0.36
C9orf3-206ENST00000428313 PPP1R35Q8TAP8 253 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 TMEM158Q8WZ71 300 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 RAX2Q96IS3 184 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 RAB9BQ9NP90 201 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 NDUFA4L2Q9NRX3 87 aa12.82□□□□□ -0.36
C9orf3-206ENST00000428313 IGHV3-13P01766 116 aa12.81□□□□□ -0.36
C9orf3-206ENST00000428313 PRNTQ86SH4 94 aa12.81□□□□□ -0.36
C9orf3-206ENST00000428313 TEX29Q8N6K0 151 aa12.81□□□□□ -0.36
C9orf3-206ENST00000428313 DLX4Q92988 240 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-206ENST00000428313 CALYQ9NYX4 217 aa12.81□□□□□ -0.36
C9orf3-206ENST00000428313 ZNF785A8K8V0 405 aa12.81□□□□□ -0.36
C9orf3-206ENST00000428313 FXYD7P58549 80 aa12.81□□□□□ -0.36
C9orf3-206ENST00000428313 PPIFP30405 207 aaKnown RBP12.8□□□□□ -0.36
C9orf3-206ENST00000428313 MOGAT3Q86VF5 341 aa12.8□□□□□ -0.36
C9orf3-206ENST00000428313 CDH23Q9H251 3354 aa12.8□□□□□ -0.36
C9orf3-206ENST00000428313 DPM2O94777 84 aa12.79□□□□□ -0.36
C9orf3-206ENST00000428313 MRPL51Q4U2R6 128 aaKnown RBP12.79□□□□□ -0.36
C9orf3-206ENST00000428313 PEAR1Q5VY43 1037 aaPredicted RBP12.79□□□□□ -0.36
C9orf3-206ENST00000428313 TNCP24821 2201 aa12.79□□□□□ -0.36
C9orf3-206ENST00000428313 TRBV7-3A0A075B6L6 115 aa12.79□□□□□ -0.36
C9orf3-206ENST00000428313 TRAV8-1A0A0A6YYK1 113 aa12.79□□□□□ -0.36
C9orf3-206ENST00000428313 IGHV5-10-1A0A0J9YXX1 117 aa12.79□□□□□ -0.36
C9orf3-206ENST00000428313 PRSS29PA6NIE9 313 aa12.79□□□□□ -0.36
C9orf3-206ENST00000428313 MEOX1P50221 254 aa12.79□□□□□ -0.36
C9orf3-206ENST00000428313 RPL32P62910 135 aaKnown RBP12.79□□□□□ -0.36
C9orf3-206ENST00000428313 TWIST1Q15672 202 aa12.79□□□□□ -0.36
C9orf3-206ENST00000428313 GLMPQ8WWB7 406 aa12.79□□□□□ -0.36
C9orf3-206ENST00000428313 FLYWCH2Q96CP2 140 aaKnown RBP12.79□□□□□ -0.36
C9orf3-206ENST00000428313 PINLYPA6NC86 204 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 K7EMI3 77 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 ATP5LO75964 103 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 CGB3P0DN86 165 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 CGB7P0DN87 165 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 ORM2P19652 201 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 SUB1P53999 127 aaKnown RBP eCLIP12.78□□□□□ -0.36
C9orf3-206ENST00000428313 ZC2HC1BQ5TFG8 222 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 GTSCR1Q86UQ5 136 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 AMN1Q8IY45 258 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 TMEM75Q8N9X5 138 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 HIST1H4GQ99525 98 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 CITED1Q99966 193 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 KNTC1P50748 2209 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 TMEM262E9PQX1 116 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 RBP4P02753 201 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 NHLRC4P0CG21 123 aaPredicted RBP12.78□□□□□ -0.36
C9orf3-206ENST00000428313 SAA1P0DJI8 122 aaPredicted RBP12.78□□□□□ -0.36
C9orf3-206ENST00000428313 SRD5A1P18405 259 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 HES3Q5TGS1 186 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 MORN3Q6PF18 240 aaPredicted RBP12.78□□□□□ -0.36
C9orf3-206ENST00000428313 FSCN3Q9NQT6 498 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 SPANXA1Q9NS26 97 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 TNFRSF18Q9Y5U5 241 aa12.78□□□□□ -0.36
C9orf3-206ENST00000428313 FCER1GP30273 86 aa12.77□□□□□ -0.36
C9orf3-206ENST00000428313 GOLT1AQ6ZVE7 132 aa12.77□□□□□ -0.36
C9orf3-206ENST00000428313 TEN1Q86WV5 123 aa12.77□□□□□ -0.36
C9orf3-206ENST00000428313 KLF14Q8TD94 323 aaPredicted RBP12.77□□□□□ -0.36
C9orf3-206ENST00000428313 NPYP01303 97 aa12.77□□□□□ -0.37
C9orf3-206ENST00000428313 TRGV9Q99603 122 aa12.77□□□□□ -0.37
C9orf3-206ENST00000428313 SSUH2Q9Y2M2 353 aa12.77□□□□□ -0.37
C9orf3-206ENST00000428313 C17orf58Q2M2W7 97 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms