RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 QRFPP83859 136 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 DDB2Q92466 427 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 V9GYY9 64 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 IGHV1-24A0A0C4DH33 117 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 IGLV3-1P01715 115 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 INSL3P51460 131 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 PRADC1Q9BSG0 188 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 TMEM213A2RRL7 107 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 Q6ZSR3 168 aa7.97□□□□□ -1.13
USP54-205ENST00000424265 SEC61GP60059 68 aa7.96□□□□□ -1.13
USP54-205ENST00000424265 SEM1Q6ZVN7 128 aa7.96□□□□□ -1.13
USP54-205ENST00000424265 KIR3DL3Q8N743 410 aa7.96□□□□□ -1.13
USP54-205ENST00000424265 CALYQ9NYX4 217 aa7.96□□□□□ -1.13
USP54-205ENST00000424265 LINC00312Q9Y6C7 94 aa7.96□□□□□ -1.13
USP54-205ENST00000424265 ZNF137PP52743 207 aa7.96□□□□□ -1.13
USP54-205ENST00000424265 VWC2Q2TAL6 325 aa7.96□□□□□ -1.13
USP54-205ENST00000424265 SP5Q6BEB4 398 aaPredicted RBP7.96□□□□□ -1.13
USP54-205ENST00000424265 KIR2DL4Q99706 377 aa7.96□□□□□ -1.13
USP54-205ENST00000424265 IGKV1D-8A0A087WSZ0 117 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 RPL13AP40429 203 aaKnown RBP7.96□□□□□ -1.14
USP54-205ENST00000424265 ADORA2A-AS1P86434 159 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 TMEM155Q4W5P6 130 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 CHAC1Q9BUX1 264 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 LY96Q9Y6Y9 160 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 C9JCJ5 164 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 SLC25A16P16260 332 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 NPCDR1Q9BY65 106 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 ALPK2Q86TB3 2170 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 IGLL5B9A064 214 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 E7EQL1 145 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 NPFFO15130 113 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 FAM19A5Q7Z5A7 132 aaPredicted RBP7.96□□□□□ -1.14
USP54-205ENST00000424265 ZNF414Q96IQ9 312 aa7.96□□□□□ -1.14
USP54-205ENST00000424265 MPDZO75970 2070 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 HBBP68871 147 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 KLF5Q13887 457 aaPredicted RBP7.95□□□□□ -1.14
USP54-205ENST00000424265 OR9G1Q8NH87 305 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 RFESDQ8TAC1 157 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 ITLN2Q8WWU7 325 aaPredicted RBP7.95□□□□□ -1.14
USP54-205ENST00000424265 RNF125Q96EQ8 232 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 AP5S1Q9NUS5 200 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 EPDR1Q9UM22 224 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 DOCK10Q96BY6 2186 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 ESPL1Q14674 2120 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 C2orf91Q6ZV80 131 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 MOB3BQ86TA1 216 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 V9GYV3 84 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 MED13Q9UHV7 2174 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 VWC2LB2RUY7 222 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 RHODO00212 210 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 IL36RNQ9UBH0 155 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 ASIPP42127 132 aa7.95□□□□□ -1.14
USP54-205ENST00000424265 ZNF816Q0VGE8 651 aaPredicted RBP7.95□□□□□ -1.14
USP54-205ENST00000424265 A0A1W2PPI3 338 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 TMEM178BH3BS89 294 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 TMEM78Q5T7P6 136 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 CCL28Q9NRJ3 127 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 DOCK11Q5JSL3 2073 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 TRANK1O15050 2925 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 HOXA3O43365 443 aaPredicted RBP7.94□□□□□ -1.14
USP54-205ENST00000424265 ERHP84090 104 aaKnown RBP7.94□□□□□ -1.14
USP54-205ENST00000424265 TFF3Q07654 80 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 PSMG4Q5JS54 123 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 RNF166Q96A37 237 aaPredicted RBP7.94□□□□□ -1.14
USP54-205ENST00000424265 FRMD6-AS1P0C7T7 363 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 OR13A1Q8NGR1 328 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 TMEM167BQ9NRX6 74 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 MED12Q93074 2177 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 TRAV2A0A0B4J234 112 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 HSPE1P61604 102 aaKnown RBP7.94□□□□□ -1.14
USP54-205ENST00000424265 DUX3Q96PT4 197 aa7.94□□□□□ -1.14
USP54-205ENST00000424265 RBPMS2Q6ZRY4 209 aaKnown RBP7.93□□□□□ -1.14
USP54-205ENST00000424265 C8orf46Q8TAG6 207 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 GTSF1Q8WW33 167 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 CDIP1Q9H305 208 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 TRBV6-6A0A0A6YYG2 114 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 IGKV1D-33P01593 117 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 IGKV1-33P01594 117 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 COX7A1P24310 79 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 GAGE2AQ6NT46 116 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 C1QL2Q7Z5L3 287 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 GPHA2Q96T91 129 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 OR2J3O76001 311 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 APOHP02749 345 aaPredicted RBP7.93□□□□□ -1.14
USP54-205ENST00000424265 PTPRQQ9UMZ3 2332 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 GGTLC3B5MD39 225 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 RPL30P62888 115 aaKnown RBP7.93□□□□□ -1.14
USP54-205ENST00000424265 CACNG7P62955 275 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 LINC00173Q6ZV60 143 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 TEX45Q8NA69 505 aa7.93□□□□□ -1.14
USP54-205ENST00000424265 ORM1P02763 201 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 NPPCP23582 126 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 BEX4Q9NWD9 120 aaPredicted RBP7.92□□□□□ -1.14
USP54-205ENST00000424265 LOC107984640A0A0U1RRK4 108 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 GCHFRP30047 84 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 RSPO1Q2MKA7 263 aaPredicted RBP7.92□□□□□ -1.14
USP54-205ENST00000424265 CEND1Q8N111 149 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 TMUB1Q9BVT8 246 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 ZNF355PQ9NSJ1 428 aa7.92□□□□□ -1.14
USP54-205ENST00000424265 ZNF818PQ6ZRF7 136 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms