RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 LEMD1Q68G75 181 aa12.17□□□□□ -0.46
SHMT2-202ENST00000414700 OR4B1Q8NGF8 309 aa12.17□□□□□ -0.46
SHMT2-202ENST00000414700 ORAOV1Q8WV07 137 aa12.17□□□□□ -0.46
SHMT2-202ENST00000414700 SLC25A22Q9H936 323 aa12.17□□□□□ -0.46
SHMT2-202ENST00000414700 FAM181BA6NEQ2 426 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 UNQ5815/PRO19632Q6UWF5 114 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 TMEM86BQ8N661 226 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 RNASE8Q8TDE3 154 aaKnown RBP12.16□□□□□ -0.46
SHMT2-202ENST00000414700 WNT10AQ9GZT5 417 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 C2CD3Q4AC94 2353 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 IGHV3-48P01763 117 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 CDKN1BP46527 198 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 RPP30P78346 268 aaKnown RBP12.16□□□□□ -0.46
SHMT2-202ENST00000414700 SLC38A11Q08AI6 406 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 SCGB2A2Q13296 93 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 ACSM6Q6P461 480 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 LINC01551Q86U37 167 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 ZNF114Q8NC26 417 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 VN1R17PQ8TDU5 208 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 GATAD1Q8WUU5 269 aa12.16□□□□□ -0.46
SHMT2-202ENST00000414700 F11RQ9Y624 299 aaKnown RBP12.16□□□□□ -0.46
SHMT2-202ENST00000414700 CD33P20138 364 aa12.15□□□□□ -0.46
SHMT2-202ENST00000414700 OR10P1Q8NGE3 313 aa12.15□□□□□ -0.46
SHMT2-202ENST00000414700 SRSF8Q9BRL6 282 aaKnown RBP12.15□□□□□ -0.46
SHMT2-202ENST00000414700 ZNF702PQ9H963 129 aa12.15□□□□□ -0.46
SHMT2-202ENST00000414700 TP53TG3Q9ULZ0 132 aa12.15□□□□□ -0.46
SHMT2-202ENST00000414700 CRLF1O75462 422 aa12.15□□□□□ -0.47
SHMT2-202ENST00000414700 IGF1P05019 195 aa12.15□□□□□ -0.47
SHMT2-202ENST00000414700 CRYGCP07315 174 aa12.15□□□□□ -0.47
SHMT2-202ENST00000414700 LINC00310P59036 64 aa12.15□□□□□ -0.47
SHMT2-202ENST00000414700 HILS1P60008 231 aa12.15□□□□□ -0.47
SHMT2-202ENST00000414700 SRSF2Q01130 221 aaKnown RBP12.15□□□□□ -0.47
SHMT2-202ENST00000414700 C19orf54Q5BKX5 351 aa12.15□□□□□ -0.47
SHMT2-202ENST00000414700 TTC9CQ8N5M4 171 aa12.15□□□□□ -0.47
SHMT2-202ENST00000414700 OR5AU1Q8NGC0 362 aa12.15□□□□□ -0.47
SHMT2-202ENST00000414700 ZNF418Q8TF45 676 aaPredicted RBP12.15□□□□□ -0.47
SHMT2-202ENST00000414700 FNDC4Q9H6D8 234 aaPredicted RBP12.15□□□□□ -0.47
SHMT2-202ENST00000414700 SLC45A2Q9UMX9 530 aa12.15□□□□□ -0.47
SHMT2-202ENST00000414700 IGHV3-21A0A0B4J1V1 117 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 GRIFINA4D1Z8 144 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 NPIPB5A8MRT5 1133 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 K7EP13 123 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 HMGB3O15347 200 aaKnown RBP12.14□□□□□ -0.47
SHMT2-202ENST00000414700 PAGE4O60829 102 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 NDUFB8O95169 186 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 DEFA4P12838 97 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 OR10G9Q8NGN4 311 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 OR10G7Q8NGN6 311 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 FANCD2OSQ96PS1 177 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 NPFFR1Q9GZQ6 430 aa12.14□□□□□ -0.47
SHMT2-202ENST00000414700 TRAV41A0A0B4J266 112 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 SERF1AO75920 110 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 PTTG1IPP53801 180 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 C11orf94C9JXX5 98 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 CCL25O15444 150 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 PDE6DO43924 150 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 OR5G3P0C626 314 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 NPPCP23582 126 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 CRIP2P52943 208 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-202ENST00000414700 PVRIGQ6DKI7 326 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 PRSS22Q9GZN4 317 aa12.13□□□□□ -0.47
SHMT2-202ENST00000414700 MRPL36Q9P0J6 103 aaKnown RBP12.13□□□□□ -0.47
SHMT2-202ENST00000414700 TRAV9-1A0A075B6T8 112 aa12.12□□□□□ -0.47
SHMT2-202ENST00000414700 CRISP2P16562 243 aa12.12□□□□□ -0.47
SHMT2-202ENST00000414700 CTRLP40313 264 aa12.12□□□□□ -0.47
SHMT2-202ENST00000414700 OPRK1P41145 380 aa12.12□□□□□ -0.47
SHMT2-202ENST00000414700 SUB1P53999 127 aaKnown RBP eCLIP12.12□□□□□ -0.472e-7■■■□□ 15.5
SHMT2-202ENST00000414700 C10orf99Q6UWK7 81 aa12.12□□□□□ -0.47
SHMT2-202ENST00000414700 STPG4Q8N801 248 aa12.12□□□□□ -0.47
SHMT2-202ENST00000414700 FAM110DQ8TAY7 271 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-202ENST00000414700 RNF2Q99496 336 aa12.12□□□□□ -0.47
SHMT2-202ENST00000414700 UQCR10Q9UDW1 63 aa12.12□□□□□ -0.47
SHMT2-202ENST00000414700 S4R3C0 116 aa12.12□□□□□ -0.47
SHMT2-202ENST00000414700 IGLV11-55A0A075B6I3 123 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 RNASE1P07998 156 aaKnown RBP12.11□□□□□ -0.47
SHMT2-202ENST00000414700 PPIFP30405 207 aaKnown RBP12.11□□□□□ -0.47
SHMT2-202ENST00000414700 ATP6V1FQ16864 119 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 FFAR4Q5NUL3 377 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 ZNF329Q86UD4 541 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 OR2T6Q8NHC8 308 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 SFRP2Q96HF1 295 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 TMEM147Q9BVK8 224 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 SAMD10Q9BYL1 202 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 F6UZH7 168 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 TOMM40O96008 361 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 ATP5IP56385 69 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-202ENST00000414700 CD69Q07108 199 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 ZNF709Q8N972 641 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 ZNF586Q9NXT0 402 aa12.11□□□□□ -0.47
SHMT2-202ENST00000414700 K7EIM0 57 aa12.1□□□□□ -0.47
SHMT2-202ENST00000414700 OR2J3O76001 311 aa12.1□□□□□ -0.47
SHMT2-202ENST00000414700 MT-CO2P00403 227 aa12.1□□□□□ -0.47
SHMT2-202ENST00000414700 SUMO1P63165 101 aaKnown RBP12.1□□□□□ -0.47
SHMT2-202ENST00000414700 Q0VG73 95 aa12.1□□□□□ -0.47
SHMT2-202ENST00000414700 SPATA45Q537H7 98 aa12.1□□□□□ -0.47
SHMT2-202ENST00000414700 LCNL1Q6ZST4 164 aa12.1□□□□□ -0.47
SHMT2-202ENST00000414700 Q6ZSV7 163 aa12.1□□□□□ -0.47
SHMT2-202ENST00000414700 Q8N976 141 aa12.1□□□□□ -0.47
SHMT2-202ENST00000414700 ZNF355PQ9NSJ1 428 aa12.1□□□□□ -0.47
SHMT2-202ENST00000414700 FBXL7Q9UJT9 491 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms