RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 LY6DQ14210 128 aa14.89□□□□□ -0.03
USP48-204ENST00000400301 COA6Q5JTJ3 125 aaKnown RBP14.89□□□□□ -0.03
USP48-204ENST00000400301 ORMDL3Q8N138 153 aa14.89□□□□□ -0.03
USP48-204ENST00000400301 ASCL2Q99929 193 aa14.89□□□□□ -0.03
USP48-204ENST00000400301 TRANK1O15050 2925 aa14.89□□□□□ -0.03
USP48-204ENST00000400301 CR1LQ2VPA4 569 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 IGF2-ASQ6U949 168 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 KMT2EQ8IZD2 1858 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 A0A1W2PS18 150 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 CYB5R2Q6BCY4 276 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 C18orf15Q96N68 181 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 PIMREGQ9BSJ6 248 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 KAAG1Q9UBP8 84 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 A6NDN8 102 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 SNAI2O43623 268 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 TFPI2P48307 235 aa14.88□□□□□ -0.03
USP48-204ENST00000400301 Q6ZWC4 215 aa14.87□□□□□ -0.03
USP48-204ENST00000400301 C2orf88Q9BSF0 95 aa14.87□□□□□ -0.03
USP48-204ENST00000400301 PLXNB1O43157 2135 aa14.87□□□□□ -0.03
USP48-204ENST00000400301 EREGO14944 169 aa14.87□□□□□ -0.03
USP48-204ENST00000400301 IGKV2-40A0A087WW87 121 aaPredicted RBP14.87□□□□□ -0.03
USP48-204ENST00000400301 NUDT3O95989 172 aa14.87□□□□□ -0.03
USP48-204ENST00000400301 IGKV2D-40P01614 121 aaPredicted RBP14.87□□□□□ -0.03
USP48-204ENST00000400301 ZNF841Q6ZN19 808 aa14.87□□□□□ -0.03
USP48-204ENST00000400301 LURAP1LQ8IV03 231 aa14.87□□□□□ -0.03
USP48-204ENST00000400301 ATG2AQ2TAZ0 1938 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 FAM181BA6NEQ2 426 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 NPIPB5A8MRT5 1133 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 MRPL27Q9P0M9 148 aaKnown RBP14.86□□□□□ -0.03
USP48-204ENST00000400301 EIF4EBP1Q13541 118 aaPredicted RBP14.86□□□□□ -0.03
USP48-204ENST00000400301 TM4SF20Q53R12 229 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 ACACBO00763 2458 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 PRTN3P24158 256 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 C18orf32Q8TCD1 76 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 FXYD5Q96DB9 178 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 ZNF414Q96IQ9 312 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 IGF2RP11717 2491 aa14.86□□□□□ -0.03
USP48-204ENST00000400301 IGKV1OR2-108A0A075B7D4 117 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 FABP5P3A8MUU1 101 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 Q86TA4 180 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 M0R1W7 72 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 SLAQ13239 276 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 CGB3P0DN86 165 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 CGB7P0DN87 165 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 NUTF2P61970 127 aaKnown RBP14.85□□□□□ -0.03
USP48-204ENST00000400301 C15orf32Q32M92 178 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 CHCHD1Q96BP2 118 aaKnown RBP14.85□□□□□ -0.03
USP48-204ENST00000400301 FAM208BQ5VWN6 2430 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 SHISA9B4DS77 424 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 MORN5Q5VZ52 161 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 THAP8Q8NA92 274 aa14.85□□□□□ -0.03
USP48-204ENST00000400301 COL25A1Q9BXS0 654 aaPredicted RBP14.85□□□□□ -0.03
USP48-204ENST00000400301 IGLC7A0M8Q6 106 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 A6NNC1 897 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 SHANK2-AS3Q9BTD1 123 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 LINC00527Q9UJ94 153 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 PHLDA3Q9Y5J5 127 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 CACNA1AO00555 2505 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 PPIFP30405 207 aaKnown RBP14.84□□□□□ -0.03
USP48-204ENST00000400301 ZNF138P52744 262 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 PRSS33Q8NF86 280 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 CEP295Q9C0D2 2601 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 F2Z2F3 143 aa14.84□□□□□ -0.03
USP48-204ENST00000400301 COL4A2P08572 1712 aa14.83□□□□□ -0.03
USP48-204ENST00000400301 HTN1P15515 57 aa14.83□□□□□ -0.03
USP48-204ENST00000400301 FBLL1A6NHQ2 334 aaKnown RBP14.83□□□□□ -0.04
USP48-204ENST00000400301 FAM231DQ6ZW35 169 aa14.83□□□□□ -0.04
USP48-204ENST00000400301 FAM168AQ92567 244 aa14.83□□□□□ -0.04
USP48-204ENST00000400301 SMIM27A0A1W2PRY6 76 aa14.83□□□□□ -0.04
USP48-204ENST00000400301 ID1P41134 155 aa14.83□□□□□ -0.04
USP48-204ENST00000400301 HIST1H1AQ02539 215 aaPredicted RBP14.83□□□□□ -0.04
USP48-204ENST00000400301 TCF15Q12870 199 aa14.83□□□□□ -0.04
USP48-204ENST00000400301 C1orf229Q6ZS94 237 aaPredicted RBP14.83□□□□□ -0.04
USP48-204ENST00000400301 NCKAP5O14513 1909 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 OOSP1A8MZH6 123 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 IGHV3-11P01762 117 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 MINOS1Q5TGZ0 78 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 DMRTA1Q5VZB9 504 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 IGFL4Q6B9Z1 124 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 C22orf34Q6ZV56 151 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 GTF2H5Q6ZYL4 71 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 Q8TAT8 98 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 SRSF8Q9BRL6 282 aaKnown RBP14.82□□□□□ -0.04
USP48-204ENST00000400301 KLK15Q9H2R5 256 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 MINOS1-NBL1R4GNA1 71 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 NUPR1O60356 82 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 PSG3Q16557 428 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 YPEL4Q96NS1 127 aa14.82□□□□□ -0.04
USP48-204ENST00000400301 IGLC1P0CG04 106 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 ZNF562Q6V9R5 426 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 LYPD1Q8N2G4 141 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 SMIM12Q96EX1 92 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 CCL19Q99731 98 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 SNHG12Q9BXW3 62 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 DYSFO75923 2080 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 C7orf71A4D174 169 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 E7EUB6 86 aa14.81□□□□□ -0.04
USP48-204ENST00000400301 GRNP28799 593 aaKnown RBP14.81□□□□□ -0.04
USP48-204ENST00000400301 LYZL1Q6UWQ5 148 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms