RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 TMEM158Q8WZ71 300 aa11.53□□□□□ -0.56
COL4A3-202ENST00000396578 RNASE6Q93091 150 aaKnown RBP11.53□□□□□ -0.56
COL4A3-202ENST00000396578 NEUROG3Q9Y4Z2 214 aa11.53□□□□□ -0.56
COL4A3-202ENST00000396578 SRRM4A7MD48 611 aaKnown RBP11.53□□□□□ -0.56
COL4A3-202ENST00000396578 J3QRE1 110 aa11.53□□□□□ -0.56
COL4A3-202ENST00000396578 SH2D1AO60880 128 aa11.53□□□□□ -0.56
COL4A3-202ENST00000396578 TMEM256Q8N2U0 113 aa11.53□□□□□ -0.56
COL4A3-202ENST00000396578 ABCA4P78363 2273 aa11.52□□□□□ -0.56
COL4A3-202ENST00000396578 LINC00477Q96M19 166 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 COL6A6A6NMZ7 2263 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 IGKV1-9A0A0C4DH69 117 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 FXYD7P58549 80 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 ANAPC10Q9UM13 185 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 CHAC1Q9BUX1 264 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 LY96Q9Y6Y9 160 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 CD5LO43866 347 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 C3orf79P0CE67 100 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 PLSCR4Q9NRQ2 329 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 TRGV1A0A0A0MS02 117 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 NRXN2Q9P2S2 1712 aa11.52□□□□□ -0.57
COL4A3-202ENST00000396578 GREB1LQ9C091 1923 aaPredicted RBP11.51□□□□□ -0.57
COL4A3-202ENST00000396578 SELLP14151 372 aa11.51□□□□□ -0.57
COL4A3-202ENST00000396578 GLRX5Q86SX6 157 aa11.51□□□□□ -0.57
COL4A3-202ENST00000396578 C9orf106Q8NAJ2 232 aa11.51□□□□□ -0.57
COL4A3-202ENST00000396578 C3orf36Q3SXR2 165 aa11.51□□□□□ -0.57
COL4A3-202ENST00000396578 TRAV41A0A0B4J266 112 aa11.51□□□□□ -0.57
COL4A3-202ENST00000396578 SPSB3Q6PJ21 355 aa11.51□□□□□ -0.57
COL4A3-202ENST00000396578 MRAPQ8TCY5 172 aa11.51□□□□□ -0.57
COL4A3-202ENST00000396578 ROS1P08922 2347 aa11.5□□□□□ -0.57
COL4A3-202ENST00000396578 VWA8A3KMH1 1905 aa11.5□□□□□ -0.57
COL4A3-202ENST00000396578 SS18Q15532 418 aa11.5□□□□□ -0.57
COL4A3-202ENST00000396578 INAFM2P0DMQ5 153 aa11.5□□□□□ -0.57
COL4A3-202ENST00000396578 PRIMA1Q86XR5 153 aa11.5□□□□□ -0.57
COL4A3-202ENST00000396578 PAQR4Q8N4S7 273 aaPredicted RBP11.5□□□□□ -0.57
COL4A3-202ENST00000396578 ZSWIM8A7E2V4 1837 aa11.5□□□□□ -0.57
COL4A3-202ENST00000396578 PSCAO43653 123 aa11.5□□□□□ -0.57
COL4A3-202ENST00000396578 THBDP07204 575 aa11.5□□□□□ -0.57
COL4A3-202ENST00000396578 BRWD3Q6RI45 1802 aa11.5□□□□□ -0.57
COL4A3-202ENST00000396578 SPATA31B1PQ5VZV4 182 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 SPANXDQ9BXN6 97 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 TRBV20-1A0A075B6N2 111 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 IGHV2-26A0A0B4J1V2 119 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 CDKN1AP38936 164 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 NSUN5P1Q3KNT7 163 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 SPXQ9BT56 116 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 PRB4P10163 310 aaPredicted RBP11.49□□□□□ -0.57
COL4A3-202ENST00000396578 LYPD1Q8N2G4 141 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 DEFB104AQ8WTQ1 72 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 C1orf159Q96HA4 380 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 SOCS3O14543 225 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 TGFBR3LH3BV60 316 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 TFF1P04155 84 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 PYY3Q5JQD4 70 aa11.49□□□□□ -0.57
COL4A3-202ENST00000396578 RLFQ13129 1914 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 ACACAQ13085 2346 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 TRAV40A0A0B4J280 105 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 CACNA1EQ15878 2313 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 A0A1B0GWJ7 208 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 ZC2HC1BQ5TFG8 222 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 ZNF664Q8N3J9 261 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 C14orf178Q8N769 122 aaPredicted RBP11.48□□□□□ -0.57
COL4A3-202ENST00000396578 LTBRP36941 435 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 NEGR1Q7Z3B1 354 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.48□□□□□ -0.57
COL4A3-202ENST00000396578 IGKV1D-8A0A087WSZ0 117 aa11.48□□□□□ -0.57
COL4A3-202ENST00000396578 SAP30O75446 220 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 GFRA4Q9GZZ7 299 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 IGHV1-18A0A0C4DH31 117 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 RPP25LQ8N5L8 163 aaKnown RBP11.47□□□□□ -0.57
COL4A3-202ENST00000396578 BMPERQ8N8U9 685 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 LY6G5BQ8NDX9 201 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 CYTL1Q9NRR1 136 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 C9orf139Q6ZV77 190 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 SNHG12Q9BXW3 62 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 A0A1W2PR77 199 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 PKDREJQ9NTG1 2253 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 IFITM1P13164 125 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 REG4Q9BYZ8 158 aa11.47□□□□□ -0.57
COL4A3-202ENST00000396578 VMO1Q7Z5L0 202 aa11.46□□□□□ -0.57
COL4A3-202ENST00000396578 GFI1Q99684 422 aa11.46□□□□□ -0.57
COL4A3-202ENST00000396578 SUPT4H1P63272 117 aaKnown RBP11.46□□□□□ -0.57
COL4A3-202ENST00000396578 LCNL1Q6ZST4 164 aa11.46□□□□□ -0.57
COL4A3-202ENST00000396578 ZNF883P0CG24 379 aa11.46□□□□□ -0.57
COL4A3-202ENST00000396578 TRAV13-1A0A0B4J241 112 aa11.46□□□□□ -0.57
COL4A3-202ENST00000396578 LHFPL1Q86WI0 220 aa11.46□□□□□ -0.57
COL4A3-202ENST00000396578 METRNQ9UJH8 293 aa11.46□□□□□ -0.57
COL4A3-202ENST00000396578 TMEM200BQ69YZ2 307 aa11.46□□□□□ -0.58
COL4A3-202ENST00000396578 A0A087WV48 116 aa11.46□□□□□ -0.58
COL4A3-202ENST00000396578 NDUFS6O75380 124 aaKnown RBP11.46□□□□□ -0.58
COL4A3-202ENST00000396578 FCN3O75636 299 aa11.46□□□□□ -0.58
COL4A3-202ENST00000396578 SMKR1H3BMG3 65 aa11.46□□□□□ -0.58
COL4A3-202ENST00000396578 TRACP01848 142 aa11.45□□□□□ -0.58
COL4A3-202ENST00000396578 Q8TAT8 98 aa11.45□□□□□ -0.58
COL4A3-202ENST00000396578 AMN1Q8IY45 258 aa11.45□□□□□ -0.58
COL4A3-202ENST00000396578 GVINP1Q7Z2Y8 2422 aa11.45□□□□□ -0.58
COL4A3-202ENST00000396578 IGHV1-3A0A0C4DH29 117 aa11.45□□□□□ -0.58
COL4A3-202ENST00000396578 IGLV3-32A0A0A0MS00 114 aa11.45□□□□□ -0.58
COL4A3-202ENST00000396578 NMSQ5H8A3 153 aa11.45□□□□□ -0.58
COL4A3-202ENST00000396578 TMEM14EPQ6UXP3 125 aa11.45□□□□□ -0.58
COL4A3-202ENST00000396578 ZNF114Q8NC26 417 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms