RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 K7EM74 188 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 PLA2G2CQ5R387 149 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 C8orf46Q8TAG6 207 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 ANKRD11Q6UB99 2663 aaPredicted RBP12.99□□□□□ -0.33
PCDH1-203ENST00000394536 LHBP01229 141 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 PATE2Q6UY27 113 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 C22orf34Q6ZV56 151 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 RITA1Q96K30 269 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 NAA38Q9BRA0 125 aaKnown RBP12.99□□□□□ -0.33
PCDH1-203ENST00000394536 MRPL27Q9P0M9 148 aaKnown RBP12.99□□□□□ -0.33
PCDH1-203ENST00000394536 RNF114Q9Y508 228 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 CSPG4Q6UVK1 2322 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 NCOR2Q9Y618 2525 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 COL6A3P12111 3177 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 A0A087X0K7 114 aa12.99□□□□□ -0.33
PCDH1-203ENST00000394536 A0A0G2JNJ9 132 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 POU2AF1Q16633 256 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 FXYD5Q96DB9 178 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 SLC25A39Q9BZJ4 359 aaPredicted RBP12.98□□□□□ -0.33
PCDH1-203ENST00000394536 Q9UFV3 132 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 DSCAMO60469 2012 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 GATA4P43694 442 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 EBLN2Q6P2I7 272 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 TIMM23O14925 209 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 FBLN7Q53RD9 439 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 FAM167A-AS1Q96KT0 104 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 PSG8Q9UQ74 426 aa12.98□□□□□ -0.33
PCDH1-203ENST00000394536 SYS1-DBNDD2H3BUS1 97 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 IGFL4Q6B9Z1 124 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 SIGLEC9Q9Y336 463 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 COL4A2P08572 1712 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 GAGE10A6NGK3 116 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 PPIFP30405 207 aaKnown RBP12.97□□□□□ -0.33
PCDH1-203ENST00000394536 ZNF833PQ6ZTB9 187 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 C1orf159Q96HA4 380 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 IGHV2-26A0A0B4J1V2 119 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.97□□□□□ -0.33
PCDH1-203ENST00000394536 COTL1Q14019 142 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 FAM169BQ8N8A8 192 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 OTORQ9NRC9 128 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 MGAQ8IWI9 3026 aa12.97□□□□□ -0.33
PCDH1-203ENST00000394536 ARMS2P0C7Q2 107 aa12.96□□□□□ -0.33
PCDH1-203ENST00000394536 S100A7P31151 101 aa12.96□□□□□ -0.33
PCDH1-203ENST00000394536 COMPP49747 757 aaPredicted RBP12.96□□□□□ -0.33
PCDH1-203ENST00000394536 RPL24P83731 157 aaKnown RBP12.96□□□□□ -0.33
PCDH1-203ENST00000394536 LINC00173Q6ZV60 143 aa12.96□□□□□ -0.33
PCDH1-203ENST00000394536 PRELID3AQ96N28 172 aa12.96□□□□□ -0.33
PCDH1-203ENST00000394536 RNF125Q96EQ8 232 aa12.96□□□□□ -0.33
PCDH1-203ENST00000394536 RAB1BQ9H0U4 201 aa12.96□□□□□ -0.33
PCDH1-203ENST00000394536 ARHGAP32A7KAX9 2087 aa12.96□□□□□ -0.34
PCDH1-203ENST00000394536 MFAP4P55083 255 aa12.96□□□□□ -0.34
PCDH1-203ENST00000394536 ATP5L2Q7Z4Y8 100 aa12.96□□□□□ -0.34
PCDH1-203ENST00000394536 IGHV1-3A0A0C4DH29 117 aa12.95□□□□□ -0.34
PCDH1-203ENST00000394536 APOBEC3AP31941 199 aaPredicted RBP12.95□□□□□ -0.34
PCDH1-203ENST00000394536 NPIPB5A8MRT5 1133 aa12.95□□□□□ -0.34
PCDH1-203ENST00000394536 S100A4P26447 101 aaKnown RBP12.95□□□□□ -0.34
PCDH1-203ENST00000394536 ZNF207O43670 478 aaKnown RBP12.95□□□□□ -0.34
PCDH1-203ENST00000394536 LDLRAD2Q5SZI1 272 aa12.95□□□□□ -0.34
PCDH1-203ENST00000394536 AMMECR1LQ6DCA0 310 aa12.95□□□□□ -0.34
PCDH1-203ENST00000394536 TRGV9Q99603 122 aa12.95□□□□□ -0.34
PCDH1-203ENST00000394536 CCL21O00585 134 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 CGB3P0DN86 165 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 CGB7P0DN87 165 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 LINC00310P59036 64 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 Q6ZS92 163 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 TP73-AS1Q9UF72 201 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 ACACBO00763 2458 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 OR2T8A6NH00 312 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 RASL11AQ6T310 242 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 DPM3Q9P2X0 92 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 C17orf77Q96MU5 243 aa12.94□□□□□ -0.34
PCDH1-203ENST00000394536 NCR2O95944 276 aa12.93□□□□□ -0.34
PCDH1-203ENST00000394536 IGLV2-8P01709 118 aa12.93□□□□□ -0.34
PCDH1-203ENST00000394536 GCSHP23434 173 aa12.93□□□□□ -0.34
PCDH1-203ENST00000394536 LOXP28300 417 aaPredicted RBP12.93□□□□□ -0.34
PCDH1-203ENST00000394536 FAM208BQ5VWN6 2430 aa12.93□□□□□ -0.34
PCDH1-203ENST00000394536 TOMM40O96008 361 aa12.93□□□□□ -0.34
PCDH1-203ENST00000394536 Q8TAT8 98 aa12.93□□□□□ -0.34
PCDH1-203ENST00000394536 SOX21Q9Y651 276 aaPredicted RBP12.93□□□□□ -0.34
PCDH1-203ENST00000394536 IGKV2-40A0A087WW87 121 aaPredicted RBP12.93□□□□□ -0.34
PCDH1-203ENST00000394536 C22orf46C9J442 243 aa12.93□□□□□ -0.34
PCDH1-203ENST00000394536 IGKV2D-40P01614 121 aaPredicted RBP12.93□□□□□ -0.34
PCDH1-203ENST00000394536 GPR183P32249 361 aa12.93□□□□□ -0.34
PCDH1-203ENST00000394536 IGF2BP2-AS1Q96M15 143 aa12.93□□□□□ -0.34
PCDH1-203ENST00000394536 B9A039 149 aa12.92□□□□□ -0.34
PCDH1-203ENST00000394536 CACNG7P62955 275 aa12.92□□□□□ -0.34
PCDH1-203ENST00000394536 KLRD1Q13241 179 aa12.92□□□□□ -0.34
PCDH1-203ENST00000394536 CTSZQ9UBR2 303 aa12.92□□□□□ -0.34
PCDH1-203ENST00000394536 UBE2V1Q13404 147 aa12.92□□□□□ -0.34
PCDH1-203ENST00000394536 COX11Q9Y6N1 276 aa12.92□□□□□ -0.34
PCDH1-203ENST00000394536 SMKR1H3BMG3 65 aa12.92□□□□□ -0.34
PCDH1-203ENST00000394536 FAM231DQ6ZW35 169 aa12.92□□□□□ -0.34
PCDH1-203ENST00000394536 ZNF414Q96IQ9 312 aa12.92□□□□□ -0.34
PCDH1-203ENST00000394536 IGHV1-24A0A0C4DH33 117 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 A6NDN8 102 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 D6R8Y8 96 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 CHCHD1Q96BP2 118 aaKnown RBP12.91□□□□□ -0.34
PCDH1-203ENST00000394536 KLK15Q9H2R5 256 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 ST20Q9HBF5 79 aa12.91□□□□□ -0.34
PCDH1-203ENST00000394536 C21orf62Q9NYP8 219 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms