RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 GAGE6Q13070 117 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 K7ERJ3 54 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 SOCS3O14543 225 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 BSPH1Q075Z2 132 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 BOD1L2Q8IYS8 172 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 C1QTNF4Q9BXJ3 329 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 CFHR2P36980 270 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 Q6ZVH6 145 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 HAPLN4Q86UW8 402 aa9.72□□□□□ -0.85
SYNPO-202ENST00000394243 ADAMTSL3P82987 1691 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 RNF144BQ7Z419 303 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 TRGV9Q99603 122 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 ARID2Q68CP9 1835 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 A0A0G2JRQ6 117 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 INS-IGF2F8WCM5 200 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 INSP01308 110 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 CEACAM8P31997 349 aaPredicted RBP9.71□□□□□ -0.85
SYNPO-202ENST00000394243 PPP1R32Q7Z5V6 425 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 SMRP1Q8NCR6 262 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 FGFBP3Q8TAT2 258 aa9.71□□□□□ -0.85
SYNPO-202ENST00000394243 LOC102723996A0A087X1L8 192 aa9.71□□□□□ -0.86
SYNPO-202ENST00000394243 C15orf62A8K5M9 175 aa9.71□□□□□ -0.86
SYNPO-202ENST00000394243 MYOD1P15172 320 aa9.71□□□□□ -0.86
SYNPO-202ENST00000394243 POLEQ07864 2286 aa9.71□□□□□ -0.86
SYNPO-202ENST00000394243 INAFM2P0DMQ5 153 aa9.71□□□□□ -0.86
SYNPO-202ENST00000394243 FGF6P10767 208 aa9.71□□□□□ -0.86
SYNPO-202ENST00000394243 SLC25A16P16260 332 aa9.71□□□□□ -0.86
SYNPO-202ENST00000394243 C1orf162Q8NEQ5 155 aaPredicted RBP9.71□□□□□ -0.86
SYNPO-202ENST00000394243 TMEM126AQ9H061 195 aa9.71□□□□□ -0.86
SYNPO-202ENST00000394243 IGHV1-24A0A0C4DH33 117 aa9.71□□□□□ -0.86
SYNPO-202ENST00000394243 C17orf100A8MU93 164 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 FAM166AQ6J272 317 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 GFRA4Q9GZZ7 299 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 AHDC1Q5TGY3 1603 aaPredicted RBP9.7□□□□□ -0.86
SYNPO-202ENST00000394243 PAX8Q06710 450 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 PRIMA1Q86XR5 153 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 CEND1Q8N111 149 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 DOCK8Q8NF50 2099 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 ANXA2RQ3ZCQ2 193 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 CYYR1Q96J86 154 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 C1orf43Q9BWL3 253 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 IGFL4Q6B9Z1 124 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 SAP25Q8TEE9 199 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 KLHDC3Q9BQ90 382 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 LIME1Q9H400 295 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 FCN3O75636 299 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 COL24A1Q17RW2 1714 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 AMTNQ6UX39 209 aa9.7□□□□□ -0.86
SYNPO-202ENST00000394243 TRAV13-1A0A0B4J241 112 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 CCL25O15444 150 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 SMIM20Q8N5G0 67 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 PRADC1Q9BSG0 188 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 TIMM23O14925 209 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 TMEM213A2RRL7 107 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 RCHY1Q96PM5 261 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 SRRM4A7MD48 611 aaKnown RBP9.69□□□□□ -0.86
SYNPO-202ENST00000394243 LINC00205P59089 165 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 QRFPP83859 136 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 CT83Q5H943 113 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 Q6ZRM9 215 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 COLCA1Q6ZS62 124 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 STPG1Q5TH74 334 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 PEMTQ9UBM1 199 aa9.69□□□□□ -0.86
SYNPO-202ENST00000394243 A0A1W2PRX2 142 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 C6orf226Q5I0X4 101 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 TMEM190Q8WZ59 177 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 ZNF581Q9P0T4 197 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 CRYGSP22914 178 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 Q86TA4 180 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 C1orf159Q96HA4 380 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 FDCSPQ8NFU4 85 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 CADP27708 2225 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 LINC00473A8K010 186 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 C1orf53Q5VUE5 145 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 NEGR1Q7Z3B1 354 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 ZCCHC24Q8N2G6 241 aaKnown RBP9.68□□□□□ -0.86
SYNPO-202ENST00000394243 CCL19Q99731 98 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 TAF1LQ8IZX4 1826 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 A0A087WWL8 130 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 MLANAQ16655 118 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 LY6G5BQ8NDX9 201 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 SPANXDQ9BXN6 97 aa9.68□□□□□ -0.86
SYNPO-202ENST00000394243 A0A1W2PR77 199 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 PSPNO60542 156 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 CDK2AP2O75956 126 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 ERCC8Q13216 396 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 C15orf53Q8NAA6 179 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 CASP8AP2Q9UKL3 1982 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 MMP23AO75900 390 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 UTF1Q5T230 341 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 ZNF114Q8NC26 417 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 MYLKQ15746 1914 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 WNT2P09544 360 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 ANKRD29Q8N6D5 301 aa9.67□□□□□ -0.86
SYNPO-202ENST00000394243 ZNF415Q09FC8 603 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 VWC2Q2TAL6 325 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 C15orf32Q32M92 178 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 SUMO4Q6EEV6 95 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 LOC285556D6RIA3 1793 aa9.66□□□□□ -0.86
SYNPO-202ENST00000394243 RBBP6Q7Z6E9 1792 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms