RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ASPHD1Q5U4P2 390 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 TMEM136Q6ZRR5 245 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 NUDT10Q8NFP7 164 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 WIPF2Q8TF74 440 aaPredicted RBP16.95■□□□□ 0.3
TRIM54-202ENST00000380075 NUDT11Q96G61 164 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 FANCD2OSQ96PS1 177 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 MLST8Q9BVC4 326 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 NAT8BQ9UHF3 227 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 SCGB2A1O75556 95 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 LTAP01374 205 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 ZNF491Q8N8L2 437 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 RNF125Q96EQ8 232 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 LPAR2Q9HBW0 351 aa16.95■□□□□ 0.3
TRIM54-202ENST00000380075 ZNF469Q96JG9 3925 aaPredicted RBP16.94■□□□□ 0.3
TRIM54-202ENST00000380075 WI2-2373I1.2A0A1W2PRP0 233 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 GNG7O60262 68 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 TCL1AP56279 114 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 LMO4P61968 165 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 USF2Q15853 346 aaPredicted RBP16.94■□□□□ 0.3
TRIM54-202ENST00000380075 PRSS57Q6UWY2 283 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 LYPD1Q8N2G4 141 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 WFDC11Q8NEX6 87 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 OR4F17Q8NGA8 305 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 CMTM2Q8TAZ6 248 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 ZNF586Q9NXT0 402 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 ZNF492Q9P255 531 aa16.94■□□□□ 0.3
TRIM54-202ENST00000380075 SNRPCP09234 159 aaKnown RBP16.93■□□□□ 0.3
TRIM54-202ENST00000380075 BRS3P32247 399 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 PAFAH1B2P68402 229 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 FBLN7Q53RD9 439 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 CLEC2AQ6UVW9 174 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 TMEM256Q8N2U0 113 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 TSKUQ8WUA8 353 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 FAM168AQ92567 244 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 ZNF331Q9NQX6 463 aaPredicted RBP16.93■□□□□ 0.3
TRIM54-202ENST00000380075 MYO9AB2RTY4 2548 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 TRBV6-1A0A0K0K1D8 114 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 PKIAP61925 76 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 CT83Q5H943 113 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 TBX15Q96SF7 602 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 BPESC1Q9GZL8 116 aa16.93■□□□□ 0.3
TRIM54-202ENST00000380075 IGHV4-30-2A0A087WSY4 118 aa16.92■□□□□ 0.3
TRIM54-202ENST00000380075 NDPQ00604 133 aa16.92■□□□□ 0.3
TRIM54-202ENST00000380075 GRIFINA4D1Z8 144 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 HLA-DRB1P01911 266 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 IL4P05112 153 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 OR10J3Q5JRS4 329 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 C10orf105Q8TEF2 133 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 Q96MF0 132 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 C21orf62Q9NYP8 219 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 RPH3ALQ9UNE2 315 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 TRBV19A0A075B6N1 114 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 TSTD3H0UI37 97 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 FRMD6-AS1P0C7T7 363 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 TPPP2P59282 170 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 ATP5L2Q7Z4Y8 100 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 Q8N9W7 124 aa16.91■□□□□ 0.3
TRIM54-202ENST00000380075 POLR3KQ9Y2Y1 108 aaPredicted RBP16.91■□□□□ 0.3
TRIM54-202ENST00000380075 IGLC2P0DOY2 106 aa16.9■□□□□ 0.3
TRIM54-202ENST00000380075 DSCR9P59020 149 aa16.9■□□□□ 0.3
TRIM54-202ENST00000380075 IQCJQ1A5X6 159 aa16.9■□□□□ 0.3
TRIM54-202ENST00000380075 KLF17Q5JT82 389 aaPredicted RBP16.9■□□□□ 0.3
TRIM54-202ENST00000380075 PRR27Q6MZM9 219 aa16.9■□□□□ 0.3
TRIM54-202ENST00000380075 MRPL54Q6P161 138 aaKnown RBP16.9■□□□□ 0.3
TRIM54-202ENST00000380075 TXN2Q99757 166 aa16.9■□□□□ 0.3
TRIM54-202ENST00000380075 TP53TG3Q9ULZ0 132 aa16.9■□□□□ 0.3
TRIM54-202ENST00000380075 IGHV7-81A0A0B4J1V7 117 aa16.89■□□□□ 0.3
TRIM54-202ENST00000380075 SPINK4O60575 86 aa16.89■□□□□ 0.3
TRIM54-202ENST00000380075 CA1P00915 261 aaPredicted RBP16.89■□□□□ 0.3
TRIM54-202ENST00000380075 FCGR2BP31994 310 aaPredicted RBP16.89■□□□□ 0.3
TRIM54-202ENST00000380075 BAGE3Q86Y29 109 aa16.89■□□□□ 0.3
TRIM54-202ENST00000380075 PRSS22Q9GZN4 317 aa16.89■□□□□ 0.3
TRIM54-202ENST00000380075 ARHGAP32A7KAX9 2087 aa16.89■□□□□ 0.3
TRIM54-202ENST00000380075 RAB4BP61018 213 aa16.89■□□□□ 0.29
TRIM54-202ENST00000380075 SLC35B1P78383 322 aa16.89■□□□□ 0.29
TRIM54-202ENST00000380075 PIMREGQ9BSJ6 248 aa16.89■□□□□ 0.29
TRIM54-202ENST00000380075 RPP21Q9H633 154 aaKnown RBP16.89■□□□□ 0.29
TRIM54-202ENST00000380075 CELSR1Q9NYQ6 3014 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 A0A1B0GUS0 222 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 H3BTX0 84 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 NDUFS8O00217 210 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 S100A7P31151 101 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 PDE6HQ13956 83 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 KLK9Q2XQG4 91 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 Q56UQ5 140 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 Q86TA4 180 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 NUP35Q8NFH5 326 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 KLK9Q9UKQ9 250 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 SOX21Q9Y651 276 aaPredicted RBP16.88■□□□□ 0.29
TRIM54-202ENST00000380075 C19orf71A6NCJ1 209 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 A8MWL6 223 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 VWC2LB2RUY7 222 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 F8W735 103 aaPredicted RBP16.88■□□□□ 0.29
TRIM54-202ENST00000380075 NUPR1O60356 82 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 EGR2P11161 476 aaPredicted RBP16.88■□□□□ 0.29
TRIM54-202ENST00000380075 AJUBAQ96IF1 538 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 MS4A10Q96PG2 267 aa16.88■□□□□ 0.29
TRIM54-202ENST00000380075 K7EQM0 130 aa16.87■□□□□ 0.29
TRIM54-202ENST00000380075 MRPS12O15235 138 aaKnown RBP16.87■□□□□ 0.29
TRIM54-202ENST00000380075 SERF1AO75920 110 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms