RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ZNF90Q03938 601 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 DIAPH2-AS1Q14236 149 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 HLA-DRB5Q30154 266 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 WDR73Q6P4I2 378 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 ZNF114Q8NC26 417 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 CACNG8Q8WXS5 425 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 TMEM133Q9H2Q1 129 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 TNCP24821 2201 aa11.36□□□□□ -0.59
HMGA1-203ENST00000374116 C9JCJ5 164 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 J3QLI3 93 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 M0R1W7 72 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 TMEM11P17152 192 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 CD69Q07108 199 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 OCIAD2Q56VL3 154 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 HCP5Q6MZN7 132 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 BCL6BQ8N143 479 aaPredicted RBP11.35□□□□□ -0.59
HMGA1-203ENST00000374116 C19orf24Q9BVV8 132 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 GNB4Q9HAV0 340 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 TRBV20OR9-2A0A075B6H5 130 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 ZNF324O75467 553 aaPredicted RBP11.35□□□□□ -0.59
HMGA1-203ENST00000374116 NDUFB4O95168 129 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 IGLV1-47P01700 117 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 IGLV2-23P01705 113 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 VMA21Q3ZAQ7 101 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 KIR3DL3Q8N743 410 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 OR10W1Q8NGF6 305 aa11.35□□□□□ -0.59
HMGA1-203ENST00000374116 NAV3Q8IVL0 2385 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 F2Z2F3 143 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 FCN1O00602 326 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 OR10J4P0C629 311 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 PRTN3P24158 256 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 LGALS7P47929 136 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 AMTP48728 403 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 SUB1P53999 127 aaKnown RBP eCLIP11.34□□□□□ -0.595e-8■□□□□ 8.7
HMGA1-203ENST00000374116 NIT1Q86X76 327 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 PIP4P2Q8N4L2 257 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 OR5T1Q8NG75 326 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 OR4F17Q8NGA8 305 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 C11orf52Q96A22 123 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 SMIM12Q96EX1 92 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 CST9LQ9H4G1 147 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 ARL2-SNX15V9GYD0 113 aa11.34□□□□□ -0.59
HMGA1-203ENST00000374116 A0A1W2PS18 150 aa11.33□□□□□ -0.6
HMGA1-203ENST00000374116 C3orf79P0CE67 100 aa11.33□□□□□ -0.6
HMGA1-203ENST00000374116 RNF151Q2KHN1 245 aa11.33□□□□□ -0.6
HMGA1-203ENST00000374116 SPATA31B1PQ5VZV4 182 aa11.33□□□□□ -0.6
HMGA1-203ENST00000374116 SETD2Q9BYW2 2564 aaPredicted RBP11.33□□□□□ -0.6
HMGA1-203ENST00000374116 IGKV1OR2-108A0A075B7D4 117 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 HINT1P49773 126 aaPredicted RBP11.32□□□□□ -0.6
HMGA1-203ENST00000374116 MOB3BQ86TA1 216 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 VPS25Q9BRG1 176 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 DERL1Q9BUN8 251 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 ZNF430Q9H8G1 570 aaPredicted RBP11.32□□□□□ -0.6
HMGA1-203ENST00000374116 TECRQ9NZ01 308 aaKnown RBP11.32□□□□□ -0.6
HMGA1-203ENST00000374116 YTHDF2Q9Y5A9 579 aaKnown RBP11.32□□□□□ -0.6
HMGA1-203ENST00000374116 TRAV9-2A0A087WT02 112 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 SNURFLB1AK76 121 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 TMEM238C9JI98 176 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 FSHBP01225 129 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 AREGP15514 252 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 SRD5A1P18405 259 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 RPEL1Q2QD12 228 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 C1orf122Q6ZSJ8 110 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 LHFPL4Q7Z7J7 247 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 TEX45Q8NA69 505 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 TMEM167BQ9NRX6 74 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 TMEM160Q9NX00 188 aa11.32□□□□□ -0.6
HMGA1-203ENST00000374116 IGHV1-69DA0A0B4J2H0 117 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 CGB1A6NKQ9 187 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 E7EUB6 86 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 CRLF1O75462 422 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 IGHV1-69P01742 117 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 TAS2R45P59539 299 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 WT1-ASQ06250 92 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 MRGPRG-AS1Q2M3A8 158 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 LDLRAD2Q5SZI1 272 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 MIR17HGQ75NE6 70 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 TCF24Q7RTU0 167 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 OCC1Q8TAD7 63 aa11.31□□□□□ -0.6
HMGA1-203ENST00000374116 SLC25A17O43808 307 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 ACTL6BO94805 426 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 IER3P46695 156 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 SRSF2Q01130 221 aaKnown RBP11.3□□□□□ -0.6
HMGA1-203ENST00000374116 MLANAQ16655 118 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 PQLC2Q6ZP29 291 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 CLEC7AQ9BXN2 247 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 SCO2A0A1W2PP80 73 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 CBY3A6NI87 242 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 LY6LH3BQJ8 138 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 BUB1B-PAK6H3BSN5 160 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 K7ERU9 68 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 M0QZ24 198 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 NPFFO15130 113 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 SAA4P35542 130 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 CX3CL1P78423 397 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 PET117Q6UWS5 81 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 TMEM136Q6ZRR5 245 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 MMD2Q8IY49 270 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 RITA1Q96K30 269 aa11.3□□□□□ -0.6
HMGA1-203ENST00000374116 FAM103A1Q9BTL3 118 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms