RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 HIST1H2BAQ96A08 127 aa10.65□□□□□ -0.71
PTPRF-202ENST00000372405 DUX5Q96PT3 197 aa10.65□□□□□ -0.71
PTPRF-202ENST00000372405 ZNF702PQ9H963 129 aa10.65□□□□□ -0.71
PTPRF-202ENST00000372405 GNB4Q9HAV0 340 aa10.65□□□□□ -0.71
PTPRF-202ENST00000372405 HELTA6NFD8 242 aa10.64□□□□□ -0.71
PTPRF-202ENST00000372405 C9JCJ5 164 aa10.64□□□□□ -0.71
PTPRF-202ENST00000372405 K7EN84 100 aa10.64□□□□□ -0.71
PTPRF-202ENST00000372405 CD5LO43866 347 aa10.64□□□□□ -0.71
PTPRF-202ENST00000372405 GNG5P63218 68 aa10.64□□□□□ -0.71
PTPRF-202ENST00000372405 ATP6V0BQ99437 205 aa10.64□□□□□ -0.71
PTPRF-202ENST00000372405 Q9H3A6 140 aa10.64□□□□□ -0.71
PTPRF-202ENST00000372405 TMEM242Q9NWH2 141 aa10.64□□□□□ -0.71
PTPRF-202ENST00000372405 TRBV19A0A075B6N1 114 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 PGPA6NDG6 321 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 IGHV3-11P01762 117 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 HNF1AP20823 631 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 RAB9AP51151 201 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 RPL15P61313 204 aaKnown RBP10.63□□□□□ -0.71
PTPRF-202ENST00000372405 CENPWQ5EE01 88 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 USMG5Q96IX5 58 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 RABAC1Q9UI14 185 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 CXorf65A6NEN9 183 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 BMPR1BO00238 502 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 SLC17A3O00476 420 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 PEX7O00628 323 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 IGHG4P01861 327 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 PSMB8P28062 276 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 ELOBQ15370 118 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 IGF2BP2-AS1Q96M15 143 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 EPDR1Q9UM22 224 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 URGCP-MRPS24S4R325 110 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 NOTCH2Q04721 2471 aa10.63□□□□□ -0.71
PTPRF-202ENST00000372405 OTOGQ6ZRI0 2925 aa10.62□□□□□ -0.71
PTPRF-202ENST00000372405 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.62□□□□□ -0.71
PTPRF-202ENST00000372405 IGLV2-8P01709 118 aa10.62□□□□□ -0.71
PTPRF-202ENST00000372405 EXOC3-AS1Q8N2X6 119 aa10.62□□□□□ -0.71
PTPRF-202ENST00000372405 CTDSP1Q9GZU7 261 aa10.62□□□□□ -0.71
PTPRF-202ENST00000372405 CLDN34H7C241 214 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 MT-ND4LP03901 98 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 SLC25A5P05141 298 aaKnown RBP10.61□□□□□ -0.71
PTPRF-202ENST00000372405 ARL3P36405 182 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 SIGLEC15Q6ZMC9 328 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 OR4F17Q8NGA8 305 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 PRSS22Q9GZN4 317 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 SMAD5-AS1Q9Y6J3 95 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 LY96Q9Y6Y9 160 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 TRAV34A0A0B4J273 112 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 ISLRO14498 428 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 APOHP02749 345 aaPredicted RBP10.61□□□□□ -0.71
PTPRF-202ENST00000372405 CXCL1P09341 107 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 GNG4P50150 75 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 RELQ04864 619 aaPredicted RBP10.61□□□□□ -0.71
PTPRF-202ENST00000372405 TCEAL7Q9BRU2 100 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 NPFFR1Q9GZQ6 430 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 OTORQ9NRC9 128 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 CDC42EP3Q9UKI2 254 aa10.61□□□□□ -0.71
PTPRF-202ENST00000372405 ZNF207O43670 478 aaKnown RBP10.6□□□□□ -0.71
PTPRF-202ENST00000372405 BUB3O43684 328 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 CRYBA1P05813 215 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 UNQ9165/PRO28630Q6UXU0 137 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 S100A7AQ86SG5 101 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 TEX29Q8N6K0 151 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 C5orf17Q8NAS9 161 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 OR4X2Q8NGF9 303 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 YAE1D1Q9NRH1 226 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 MTORP42345 2549 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 NF1P21359 2839 aa10.6□□□□□ -0.71
PTPRF-202ENST00000372405 TGIF2-C20orf24A0A0A6YYL0 155 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 SRP14P37108 136 aaKnown RBP10.59□□□□□ -0.71
PTPRF-202ENST00000372405 OR5I1Q13606 314 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 TEX38Q6PEX7 206 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 Q8N2B8 174 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 SFRP2Q96HF1 295 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 RPH3ALQ9UNE2 315 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 IGHV3-66A0A0C4DH42 116 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 A0A0G2JLM5 398 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 H7BYZ3 331 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 TCRAP04437 139 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 PFN1P07737 140 aaKnown RBP10.59□□□□□ -0.71
PTPRF-202ENST00000372405 CD99P14209 185 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 RPL7P18124 248 aaKnown RBP10.59□□□□□ -0.71
PTPRF-202ENST00000372405 RAB5AP20339 215 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 CNN1P51911 297 aaKnown RBP10.59□□□□□ -0.71
PTPRF-202ENST00000372405 TAS2R60P59551 318 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 OR8I2Q8N0Y5 310 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 ANAPC16Q96DE5 110 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 SGK494Q96LW2 274 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 ATG101Q9BSB4 218 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 RNF24Q9Y225 148 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 PRELID1Q9Y255 219 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 KLF12Q9Y4X4 402 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 U3KQE9 123 aa10.59□□□□□ -0.71
PTPRF-202ENST00000372405 IGHV3OR16-13A0A075B7E8 117 aa10.58□□□□□ -0.72
PTPRF-202ENST00000372405 IGHV3-49A0A0A0MS15 119 aa10.58□□□□□ -0.72
PTPRF-202ENST00000372405 IGHV3-74A0A0B4J1X5 117 aa10.58□□□□□ -0.72
PTPRF-202ENST00000372405 PRB4P10163 310 aaPredicted RBP10.58□□□□□ -0.72
PTPRF-202ENST00000372405 TMEM183BQ1AE95 376 aa10.58□□□□□ -0.72
PTPRF-202ENST00000372405 NHLRC2Q8NBF2 726 aa10.58□□□□□ -0.72
PTPRF-202ENST00000372405 SMR3AQ99954 134 aa10.58□□□□□ -0.72
PTPRF-202ENST00000372405 ESM1Q9NQ30 184 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms