RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 WDR86Q86TI4 376 aa11.18□□□□□ -0.62
VCP-201ENST00000358901 Q8TAT8 98 aa11.18□□□□□ -0.62
VCP-201ENST00000358901 C2orf88Q9BSF0 95 aa11.18□□□□□ -0.62
VCP-201ENST00000358901 MCRIP2Q9BUT9 160 aaKnown RBP11.18□□□□□ -0.62
VCP-201ENST00000358901 U3KQA8 63 aa11.18□□□□□ -0.62
VCP-201ENST00000358901 NPFFO15130 113 aa11.17□□□□□ -0.62
VCP-201ENST00000358901 CYYR1Q96J86 154 aa11.17□□□□□ -0.62
VCP-201ENST00000358901 SRSF1Q07955 248 aaKnown RBP eCLIP11.17□□□□□ -0.623e-6■■□□□ 12.5
VCP-201ENST00000358901 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.17□□□□□ -0.62
VCP-201ENST00000358901 MPV17L2Q567V2 206 aa11.17□□□□□ -0.62
VCP-201ENST00000358901 Q6ZR03 302 aa11.17□□□□□ -0.62
VCP-201ENST00000358901 SPACA3Q8IXA5 215 aa11.17□□□□□ -0.62
VCP-201ENST00000358901 WDR87Q6ZQQ6 2873 aa11.17□□□□□ -0.62
VCP-201ENST00000358901 TRAV21A0A0B4J279 112 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 IGHV2-5P01817 119 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 EREGO14944 169 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 LY6HO94772 140 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 CUL9Q8IWT3 2517 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 PLXNA2O75051 1894 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 A0A0G2JNJ9 132 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 A8MWP6 167 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 F2Z2F3 143 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 TTC32Q5I0X7 151 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 Q9UFV3 132 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 ITLN2Q8WWU7 325 aaPredicted RBP11.16□□□□□ -0.62
VCP-201ENST00000358901 DUX3Q96PT4 197 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 MS4A6AQ9H2W1 248 aa11.16□□□□□ -0.62
VCP-201ENST00000358901 IGLV3-1P01715 115 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 TPTE2P1Q5T6R2 138 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 HAPLN4Q86UW8 402 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 MRPL27Q9P0M9 148 aaKnown RBP11.15□□□□□ -0.62
VCP-201ENST00000358901 A0A1W2PPI3 338 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 PAX1P15863 534 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 SRD5A1P18405 259 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 PAX8Q06710 450 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 C5orf64Q2M2E5 130 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 IGFL4Q6B9Z1 124 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 WFDC12Q8WWY7 111 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 ERVK11-1P61568 191 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 SEC11AP67812 179 aa11.15□□□□□ -0.62
VCP-201ENST00000358901 NCOA6Q14686 2063 aaPredicted RBP11.15□□□□□ -0.63
VCP-201ENST00000358901 A0A087X0K7 114 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 SYS1-DBNDD2H3BUS1 97 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 TMEM219Q86XT9 240 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 CYSLTR1Q9Y271 337 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 IGKCP01834 107 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 RNASE1P07998 156 aaKnown RBP11.14□□□□□ -0.63
VCP-201ENST00000358901 GUSBP1Q15486 140 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 Q6ZS92 163 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 TMEM14BQ9NUH8 114 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 FNDC10F2Z333 226 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 EMP1P54849 157 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 VMO1Q7Z5L0 202 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 MOB4Q9Y3A3 225 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 DENND4CQ5VZ89 1909 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 BUB1B-PAK6H3BSN5 160 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 ZNF114Q8NC26 417 aa11.14□□□□□ -0.63
VCP-201ENST00000358901 POLR3KQ9Y2Y1 108 aaPredicted RBP11.14□□□□□ -0.63
VCP-201ENST00000358901 SONP18583 2426 aaKnown RBP11.13□□□□□ -0.63
VCP-201ENST00000358901 TRAV40A0A0B4J280 105 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 VDAC2P45880 294 aaPredicted RBP11.13□□□□□ -0.63
VCP-201ENST00000358901 HSD52Q0P140 79 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 ORMDL2Q53FV1 153 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 RPRMLQ8N4K4 120 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 VCX2Q9H322 139 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 PRR14LQ5THK1 2151 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 ZNF329Q86UD4 541 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 OR13C6PQ8NH95 151 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 RNF5Q99942 180 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 DYSFO75923 2080 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 ITGB1BP1O14713 200 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 GTSCR1Q86UQ5 136 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 FAM169BQ8N8A8 192 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 PTPN13Q12923 2485 aa11.13□□□□□ -0.63
VCP-201ENST00000358901 DNAL4O96015 105 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 IGHV2-70P01814 119 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 SCGB1A1P11684 91 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 DUX4L9Q6RFH8 374 aaPredicted RBP11.12□□□□□ -0.63
VCP-201ENST00000358901 AMN1Q8IY45 258 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 Q0VG73 95 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 CD300EQ496F6 205 aaPredicted RBP11.12□□□□□ -0.63
VCP-201ENST00000358901 NUP37Q8NFH4 326 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 NPFFR1Q9GZQ6 430 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 ZNF815PA8K554 130 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 TOMM40O96008 361 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 DEFB104AQ8WTQ1 72 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 LINC01587Q99440 93 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 COPS9Q8WXC6 57 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 ZNF479Q96JC4 524 aa11.12□□□□□ -0.63
VCP-201ENST00000358901 SH2D1AO60880 128 aa11.11□□□□□ -0.63
VCP-201ENST00000358901 SIGLEC15Q6ZMC9 328 aa11.11□□□□□ -0.63
VCP-201ENST00000358901 OR9G4Q8NGQ1 327 aa11.11□□□□□ -0.63
VCP-201ENST00000358901 TOMM7Q9P0U1 55 aa11.11□□□□□ -0.63
VCP-201ENST00000358901 LSM4Q9Y4Z0 139 aaKnown RBP11.11□□□□□ -0.63
VCP-201ENST00000358901 TRAV41A0A0B4J266 112 aa11.11□□□□□ -0.63
VCP-201ENST00000358901 SMKR1H3BMG3 65 aa11.11□□□□□ -0.63
VCP-201ENST00000358901 COL8A2P25067 703 aa11.11□□□□□ -0.63
VCP-201ENST00000358901 IFI27P40305 119 aaPredicted RBP11.11□□□□□ -0.63
VCP-201ENST00000358901 NDPQ00604 133 aa11.11□□□□□ -0.63
VCP-201ENST00000358901 PSG3Q16557 428 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms