RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 RELQ04864 619 aaPredicted RBP12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 RHEBQ15382 184 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 SPATA31B1PQ5VZV4 182 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 C1QL4Q86Z23 238 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 CLRN3Q8NCR9 226 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 OR4X2Q8NGF9 303 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 RNF125Q96EQ8 232 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 OR4F4Q96R69 305 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 SLC25A2Q9BXI2 301 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 KLK15Q9H2R5 256 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 PRELID1Q9Y255 219 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 TSSC4Q9Y5U2 329 aaPredicted RBP12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 TGP01266 2768 aa12.67□□□□□ -0.38
PDLIM1-201ENST00000329399 FAM74A7A6NL05 159 aa12.66□□□□□ -0.38
PDLIM1-201ENST00000329399 IGLV1-40P01703 118 aa12.66□□□□□ -0.38
PDLIM1-201ENST00000329399 LYZP61626 148 aa12.66□□□□□ -0.38
PDLIM1-201ENST00000329399 KHDC1LQ5JSQ8 128 aa12.66□□□□□ -0.38
PDLIM1-201ENST00000329399 CST9LP1Q5W188 147 aa12.66□□□□□ -0.38
PDLIM1-201ENST00000329399 BMPR1BO00238 502 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 TRGV3P03979 118 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 KIAA0141Q14154 515 aaPredicted RBP12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 GUCA2BQ16661 112 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 FAM90A2PQ658T7 463 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 TVP23CQ96ET8 276 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 SHANK2-AS3Q9BTD1 123 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 SLC25A39Q9BZJ4 359 aaPredicted RBP12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 DOK5Q9P104 306 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 G3V4G9 280 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 IGHG4P01861 327 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 UBE2L3P68036 154 aaKnown RBP12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 SLC35B1P78383 322 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 DUX3Q96PT4 197 aa12.65□□□□□ -0.38
PDLIM1-201ENST00000329399 OR2T8A6NH00 312 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 ZNF727A8MUV8 499 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 H3BQ15 152 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 TGOLN2O43493 480 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 IL4P05112 153 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 CLEC3BP05452 202 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 TEX38Q6PEX7 206 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 C8orf86Q6ZUL3 223 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 BPIFA4PQ86YQ2 179 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 RNF152Q8N8N0 203 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 C11orf52Q96A22 123 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 ZNF503Q96F45 646 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 NAT8Q9UHE5 227 aa12.64□□□□□ -0.39
PDLIM1-201ENST00000329399 H3BRN7 92 aa12.63□□□□□ -0.39
PDLIM1-201ENST00000329399 HIST1H1EP10412 219 aaKnown RBP12.63□□□□□ -0.39
PDLIM1-201ENST00000329399 PSMB8P28062 276 aa12.63□□□□□ -0.39
PDLIM1-201ENST00000329399 TPPP2P59282 170 aa12.63□□□□□ -0.39
PDLIM1-201ENST00000329399 TMEM241Q24JQ0 296 aa12.63□□□□□ -0.39
PDLIM1-201ENST00000329399 OR4F17Q8NGA8 305 aa12.63□□□□□ -0.39
PDLIM1-201ENST00000329399 GPR82Q96P67 336 aa12.63□□□□□ -0.39
PDLIM1-201ENST00000329399 SMIM7Q9BQ49 75 aa12.63□□□□□ -0.39
PDLIM1-201ENST00000329399 RABAC1Q9UI14 185 aa12.63□□□□□ -0.39
PDLIM1-201ENST00000329399 A0A087WWC5 75 aa12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 UBE2G2P60604 165 aa12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 FOXE3Q13461 319 aa12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 DEFB136Q30KP8 78 aa12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 OXLD1Q5BKU9 147 aa12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 LYPD1Q8N2G4 141 aa12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 FXYD5Q96DB9 178 aa12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 MS4A10Q96PG2 267 aa12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 PUS1Q9Y606 427 aaKnown RBP eCLIP12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 LY96Q9Y6Y9 160 aa12.62□□□□□ -0.39
PDLIM1-201ENST00000329399 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 M0R036 132 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 EIF3GO75821 320 aaKnown RBP eCLIP12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 ELANEP08246 267 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 NBEAP1P0C6P0 100 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 GPR183P32249 361 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 ADMP35318 185 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 CEBPGP53567 150 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 DEFA6Q01524 100 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 C1orf194Q5T5A4 169 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 ZNF343Q6P1L6 599 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 WFDC9Q8NEX5 89 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 RAX2Q96IS3 184 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 CCDC140Q96MF4 163 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 PARLQ9H300 379 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 TUBA4BQ9H853 241 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 SDF2L1Q9HCN8 221 aa12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 YTHDF2Q9Y5A9 579 aaKnown RBP12.61□□□□□ -0.39
PDLIM1-201ENST00000329399 TRAV5A0A0B4J249 113 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 S100A9P06702 114 aaKnown RBP12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 PF4V1P10720 104 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 GP9P14770 177 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 RPL7P18124 248 aaKnown RBP12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 PDE6HQ13956 83 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 CLEC19AQ6UXS0 136 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 KLHL30-AS1Q8NEE0 82 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 MYOZ3Q8TDC0 251 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 CHRDL1Q9BU40 450 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 GNB4Q9HAV0 340 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 SMCO4Q9NRQ5 59 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 TMEM242Q9NWH2 141 aa12.6□□□□□ -0.39
PDLIM1-201ENST00000329399 ZNF98A6NK75 572 aa12.59□□□□□ -0.39
PDLIM1-201ENST00000329399 OR10J4P0C629 311 aa12.59□□□□□ -0.39
PDLIM1-201ENST00000329399 ATP5G3P48201 142 aa12.59□□□□□ -0.39
PDLIM1-201ENST00000329399 MEOX2P50222 304 aa12.59□□□□□ -0.39
PDLIM1-201ENST00000329399 SAMD5Q5TGI4 173 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms