RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 M0R2Z0 102 aa12.75□□□□□ -0.37
USHBP1-202ENST00000324554 ATP5L2Q7Z4Y8 100 aa12.75□□□□□ -0.37
USHBP1-202ENST00000324554 C5orf17Q8NAS9 161 aa12.75□□□□□ -0.37
USHBP1-202ENST00000324554 RPP21Q9H633 154 aaKnown RBP12.75□□□□□ -0.37
USHBP1-202ENST00000324554 A0A1W2PPR1 153 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 I3L2K1 104 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 TOMM40O96008 361 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 LTAP01374 205 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 PSG1P11464 419 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 LDLRAD2Q5SZI1 272 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 Q6ZN92 141 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 KIR3DL3Q8N743 410 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 ITLN2Q8WWU7 325 aaPredicted RBP12.74□□□□□ -0.37
USHBP1-202ENST00000324554 Q9H3A6 140 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 ONECUT1Q9UBC0 465 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 SVEP1Q4LDE5 3571 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 TCRAP04437 139 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 Q71RC1 249 aaPredicted RBP12.74□□□□□ -0.37
USHBP1-202ENST00000324554 OR8B3Q8NGG8 313 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 OR8B2Q96RD0 313 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 TXN2Q99757 166 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 HIGD1AQ9Y241 93 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 GOLT1BQ9Y3E0 138 aa12.74□□□□□ -0.37
USHBP1-202ENST00000324554 UTP20O75691 2785 aaKnown RBP12.74□□□□□ -0.37
USHBP1-202ENST00000324554 C19orf71A6NCJ1 209 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 C2orf70A6NJV1 201 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 LYZP61626 148 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 PLGLAQ15195 96 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 SPATA12Q7Z6I5 190 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 STPG4Q8N801 248 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 RNF5Q99942 180 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 TRAV8-1A0A0A6YYK1 113 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 TMEM8BA6NDV4 472 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 M0QZ24 198 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 HBBP68871 147 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 GAGE1Q13065 139 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 Q56UQ5 140 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 COL5A1-AS1Q5SY13 56 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 LY6G5BQ8NDX9 201 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 FMC1Q96HJ9 113 aa12.73□□□□□ -0.37
USHBP1-202ENST00000324554 SH2D7A6NKC9 451 aaPredicted RBP12.72□□□□□ -0.37
USHBP1-202ENST00000324554 TIMM23O14925 209 aa12.72□□□□□ -0.37
USHBP1-202ENST00000324554 LIPFP07098 398 aa12.72□□□□□ -0.37
USHBP1-202ENST00000324554 FOXA3P55318 350 aaPredicted RBP12.72□□□□□ -0.37
USHBP1-202ENST00000324554 PGLYRP4Q96LB8 373 aa12.72□□□□□ -0.37
USHBP1-202ENST00000324554 P01737 135 aa12.72□□□□□ -0.37
USHBP1-202ENST00000324554 HNRNPA3P51991 378 aaKnown RBP12.72□□□□□ -0.37
USHBP1-202ENST00000324554 PMCHL1Q16048 86 aa12.72□□□□□ -0.37
USHBP1-202ENST00000324554 SLC25A39Q9BZJ4 359 aaPredicted RBP12.72□□□□□ -0.37
USHBP1-202ENST00000324554 CLEC5AQ9NY25 188 aa12.72□□□□□ -0.37
USHBP1-202ENST00000324554 A8MWL6 223 aa12.71□□□□□ -0.37
USHBP1-202ENST00000324554 BTF3P20290 206 aaKnown RBP12.71□□□□□ -0.37
USHBP1-202ENST00000324554 RASL11BQ9BPW5 248 aa12.71□□□□□ -0.37
USHBP1-202ENST00000324554 LAMTOR2Q9Y2Q5 125 aa12.71□□□□□ -0.37
USHBP1-202ENST00000324554 FAM120AOSQ5T036 256 aa12.71□□□□□ -0.38
USHBP1-202ENST00000324554 KLHDC1Q8N7A1 406 aa12.71□□□□□ -0.38
USHBP1-202ENST00000324554 SRSF8Q9BRL6 282 aaKnown RBP12.71□□□□□ -0.38
USHBP1-202ENST00000324554 ZNF492Q9P255 531 aa12.71□□□□□ -0.38
USHBP1-202ENST00000324554 TOX4O94842 621 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 CNIH1O95406 144 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 IGKV1-17P01599 117 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 CT83Q5H943 113 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 EXOC3-AS1Q8N2X6 119 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 CIARTQ8N365 385 aaPredicted RBP12.7□□□□□ -0.38
USHBP1-202ENST00000324554 TMEM14CQ9P0S9 112 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 ARHGAP32A7KAX9 2087 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 K7EIM0 57 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 HTR1DP28221 377 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 CRYBG3Q68DQ2 2970 aa12.7□□□□□ -0.38
USHBP1-202ENST00000324554 NDUFS7O75251 213 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 NDUFB8O95169 186 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 IGLV2-11P01706 119 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 TSPOP30536 169 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 ARF6P62330 175 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 Q86TA4 180 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 OTORQ9NRC9 128 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 EPG5Q9HCE0 2579 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 TRAV9-2A0A087WT02 112 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 PRB4P10163 310 aaPredicted RBP12.69□□□□□ -0.38
USHBP1-202ENST00000324554 IGLL1P15814 213 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 OR11H6Q8NGC7 330 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 CFHR4Q92496 578 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 ZFP30Q9Y2G7 519 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 HILPDAQ9Y5L2 63 aa12.69□□□□□ -0.38
USHBP1-202ENST00000324554 RBPMS2Q6ZRY4 209 aaKnown RBP12.68□□□□□ -0.38
USHBP1-202ENST00000324554 LINC00173Q6ZV60 143 aa12.68□□□□□ -0.38
USHBP1-202ENST00000324554 IGFBPL1Q8WX77 278 aa12.68□□□□□ -0.38
USHBP1-202ENST00000324554 DAZAP1Q96EP5 407 aaKnown RBP12.68□□□□□ -0.38
USHBP1-202ENST00000324554 DPM3Q9P2X0 92 aa12.68□□□□□ -0.38
USHBP1-202ENST00000324554 NPIPB6E9PJ23 425 aa12.68□□□□□ -0.38
USHBP1-202ENST00000324554 NBR2O15453 112 aa12.68□□□□□ -0.38
USHBP1-202ENST00000324554 GOLT1AQ6ZVE7 132 aa12.68□□□□□ -0.38
USHBP1-202ENST00000324554 BBC3Q96PG8 261 aaPredicted RBP12.68□□□□□ -0.38
USHBP1-202ENST00000324554 GFRA4Q9GZZ7 299 aa12.68□□□□□ -0.38
USHBP1-202ENST00000324554 RAB1BQ9H0U4 201 aa12.68□□□□□ -0.38
USHBP1-202ENST00000324554 UBTD1Q9HAC8 227 aa12.68□□□□□ -0.38
USHBP1-202ENST00000324554 MED13LQ71F56 2210 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 ZNF785A8K8V0 405 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 PRNTQ86SH4 94 aa12.67□□□□□ -0.38
USHBP1-202ENST00000324554 RBM14Q96PK6 669 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms