RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 KIR2DL5BA0A0G2JPC4 375 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 TMEM89A2RUT3 159 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 COX6B1P14854 86 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 BVES-AS1Q5T3Y7 98 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 C1QL2Q7Z5L3 287 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 KIR2DL5AQ8N109 375 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 SIRPDQ9H106 197 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 ZFAND3Q9H8U3 227 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 NDUFA12Q9UI09 145 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 ZNF134P52741 427 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 ZFP36L1Q07352 338 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 RASL10BQ96S79 203 aa6.27□□□□□ -1.41
LIMCH1-201ENST00000313860 A0A087WWC5 75 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 A0A096LNI7 61 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 IGKV2D-26A0A0A0MRZ7 120 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 SPINK1P00995 79 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 MST1P26927 711 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 SRSF3P84103 164 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 XAF1Q6GPH4 301 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 UNQ6494/PRO21346Q6UXR6 183 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 WFDC1Q9HC57 220 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 IGKV1-5P01602 117 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 KIR3DX1Q9H7L2 352 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 KIAA1551Q9HCM1 1747 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 IGKV2D-24A0A075B6R9 120 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 DNAJC9-AS1A6NH13 148 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 ZNF708P17019 499 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 DEFB132Q7Z7B7 95 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 C1orf158Q8N1D5 194 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 MORN4Q8NDC4 146 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 DLL3Q9NYJ7 618 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 PFN1P07737 140 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 BEAN1Q3B7T3 259 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 C5orf56Q8N8D9 126 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 MBD3L2Q8NHZ7 208 aaPredicted RBP6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 LINC00615Q96LM1 132 aaPredicted RBP6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 POLR3KQ9Y2Y1 108 aaPredicted RBP6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 TANC1Q9C0D5 1861 aa6.26□□□□□ -1.41
LIMCH1-201ENST00000313860 RNASE3P12724 160 aaKnown RBP6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 SUPT4H1P63272 117 aaKnown RBP6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 NMSQ5H8A3 153 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 C1orf220Q5T0J3 134 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 DEPPQ9NTK1 212 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 TCRBV4S1A1TA0A5B7 111 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 LYL1P12980 280 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 LINC01620Q4KN68 170 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 SLC25A45Q8N413 288 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 MRPS18AQ9NVS2 196 aaKnown RBP6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 TAF1LQ8IZX4 1826 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 MSGN1A6NI15 193 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 J3QT63 122 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 GREM1O60565 184 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 IGKV1D-33P01593 117 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 IGKV1-33P01594 117 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 IGHMP01871 453 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 SNHG28P0DPA3 235 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 TEX36Q5VZQ5 186 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 ADAMTSL4Q6UY14 1074 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 FAM216BQ8N7L0 139 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 ZNF501Q96CX3 271 aaPredicted RBP6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 Q9HAA7 133 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 J3QQQ9 107 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 NANOS3P60323 173 aaKnown RBP6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 C12orf74Q32Q52 190 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 Q6ZVQ6 151 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 OCC1Q8TAD7 63 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 C9orf85Q96MD7 179 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 TNFRSF12AQ9NP84 129 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 IGKV6-21A0A0C4DH24 114 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 TRBV10-2A0A0K0K1G8 114 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 LINC00694P0DN24 101 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 SLC25A28Q96A46 364 aa6.25□□□□□ -1.41
LIMCH1-201ENST00000313860 NPYP01303 97 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 ZGLP1P0C6A0 271 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 RPL39P5Q59GN2 51 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 CELA1Q9UNI1 258 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 MRPS18BQ9Y676 258 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 NHSL1Q5SYE7 1610 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 PGFP49763 221 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 LSM6P62312 80 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 CYS1Q717R9 158 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 SCARF2Q96GP6 870 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 AGMATQ9BSE5 352 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 TMEFF2Q9UIK5 374 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 CICQ96RK0 1608 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 TRPM3Q9HCF6 1732 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 LYPD1Q8N2G4 141 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 IL17CQ9P0M4 197 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 KCPQ6ZWJ8 1503 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 TRBV25-1A0A075B6N4 114 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 BPY2O14599 106 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 WFDC10AQ9H1F0 79 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 PTPRFP10586 1907 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 MEGF6O75095 1541 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 VSIG8P0DPA2 414 aa6.24□□□□□ -1.41
LIMCH1-201ENST00000313860 ARFGEF1Q9Y6D6 1849 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 CLEC2BQ92478 149 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 FANCD2OSQ96PS1 177 aa6.23□□□□□ -1.41
LIMCH1-201ENST00000313860 SCN7AQ01118 1682 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms