RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 ZSWIM8A7E2V4 1837 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 LCN12Q6JVE5 192 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 ZNF48Q96MX3 618 aaPredicted RBP7.72□□□□□ -1.17
CUX1-201ENST00000292535 GGTLC1Q9BX51 225 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 NR2C2APQ86WQ0 139 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 RASL10AQ92737 203 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 TRBV6-7A0A0A0MS04 114 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 LINC00518Q8N0U6 118 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 WFDC6Q9BQY6 131 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 RAMP1O60894 148 aa7.72□□□□□ -1.17
CUX1-201ENST00000292535 TRGV1A0A0A0MS02 117 aa7.71□□□□□ -1.17
CUX1-201ENST00000292535 SRD5A1P18405 259 aa7.71□□□□□ -1.17
CUX1-201ENST00000292535 PLSCR4Q9NRQ2 329 aa7.71□□□□□ -1.17
CUX1-201ENST00000292535 DUTP33316 252 aaKnown RBP7.71□□□□□ -1.17
CUX1-201ENST00000292535 ATP5G3P48201 142 aa7.71□□□□□ -1.17
CUX1-201ENST00000292535 LINC01356Q8N9X3 169 aa7.71□□□□□ -1.17
CUX1-201ENST00000292535 EVI2AP22794 236 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 AKAP13Q12802 2813 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 ERVH48-1M5A8F1 160 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 RAMP3O60896 148 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 IGHV3-73A0A0B4J1V6 119 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 EFNA4P52798 201 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 IFI27L1Q96BM0 104 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 SPANXDQ9BXN6 97 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 IGLV3-12A0A075B6K2 115 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 M0R1W7 72 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 SLC25A39Q9BZJ4 359 aaPredicted RBP7.71□□□□□ -1.18
CUX1-201ENST00000292535 GSN-AS1Q9NRJ2 163 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 GREM1O60565 184 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 CT83Q5H943 113 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 LY6G5BQ8NDX9 201 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 RMI2Q96E14 147 aa7.71□□□□□ -1.18
CUX1-201ENST00000292535 IGLV3-32A0A0A0MS00 114 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 MAST4O15021 2626 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 C5orf64Q2M2E5 130 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 PLPPR1Q8TBJ4 325 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 PKIGQ9Y2B9 76 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 SRSF8Q9BRL6 282 aaKnown RBP7.7□□□□□ -1.18
CUX1-201ENST00000292535 MCRIP2Q9BUT9 160 aaKnown RBP7.7□□□□□ -1.18
CUX1-201ENST00000292535 IGHV1-8P0DP01 117 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 PSG1P11464 419 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 RPL23P62829 140 aaKnown RBP7.7□□□□□ -1.18
CUX1-201ENST00000292535 SPRR3Q9UBC9 169 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 A0A1B0GWJ7 208 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 GFI1BQ5VTD9 330 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 IGHV3-64A0A075B6Q5 118 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 D6R8Y8 96 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 ZNF672Q499Z4 452 aaPredicted RBP7.7□□□□□ -1.18
CUX1-201ENST00000292535 ADAMTS9Q9P2N4 1935 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 A0A0U1RRA0 63 aa7.7□□□□□ -1.18
CUX1-201ENST00000292535 CTSBP07858 339 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 TIMM21Q9BVV7 248 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 PLXNA2O75051 1894 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 LCNL1Q6ZST4 164 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 C9orf139Q6ZV77 190 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 PIP4P2Q8N4L2 257 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 KLHL30-AS1Q8NEE0 82 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 PLXNA3P51805 1871 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 TMEM178BH3BS89 294 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 LINC00477Q96M19 166 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 AMBPP02760 352 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 PYYP10082 97 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 NDUFAF3Q9BU61 184 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 PMS2P5A8MQ11 134 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 TNFRSF6BO95407 300 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 C2orf82Q6UX34 121 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 BPTFQ12830 3046 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 IGHV1-46P01743 117 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 SUPT4H1P63272 117 aaKnown RBP7.69□□□□□ -1.18
CUX1-201ENST00000292535 NKAPP1Q8N9T2 125 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 TMEM126AQ9H061 195 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 WBP1Q96G27 269 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 LRRC37AA6NMS7 1700 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 TRAV5A0A0B4J249 113 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 SFTA2Q6UW10 78 aa7.69□□□□□ -1.18
CUX1-201ENST00000292535 TMEM155Q4W5P6 130 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 Q5BKY6 102 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 MRPL14Q6P1L8 145 aaKnown RBP7.68□□□□□ -1.18
CUX1-201ENST00000292535 SPRED2Q7Z698 418 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 IGHV1-3A0A0C4DH29 117 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 NPIPB5A8MRT5 1133 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 KLF17Q5JT82 389 aaPredicted RBP7.68□□□□□ -1.18
CUX1-201ENST00000292535 TMEM242Q9NWH2 141 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 FBLN5Q9UBX5 448 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 HEPN1Q6WQI6 88 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 TRAV8-1A0A0A6YYK1 113 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 TRAV1-1A0A0B4J248 108 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 TMEM219Q86XT9 240 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 OCC1Q8TAD7 63 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 ZFP36L1Q07352 338 aaKnown RBP7.68□□□□□ -1.18
CUX1-201ENST00000292535 RPRMLQ8N4K4 120 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 C6orf226Q5I0X4 101 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 LYPD1Q8N2G4 141 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 CSTL1Q9H114 145 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 ZNF138P52744 262 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 DAZ1Q9NQZ3 744 aaKnown RBP7.68□□□□□ -1.18
CUX1-201ENST00000292535 A0A1B0GW64 132 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 MRAPQ8TCY5 172 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 RHODO00212 210 aa7.68□□□□□ -1.18
CUX1-201ENST00000292535 NDUFS8O00217 210 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms