RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 FAM3BP58499 235 aaPredicted RBP9.16□□□□□ -0.94
VPS4A-201ENST00000254950 ZNF726P1Q15940 193 aa9.16□□□□□ -0.94
VPS4A-201ENST00000254950 DYNAPQ8N1N2 210 aa9.16□□□□□ -0.94
VPS4A-201ENST00000254950 H3BUA1 57 aa9.16□□□□□ -0.94
VPS4A-201ENST00000254950 HSPB9Q9BQS6 159 aa9.16□□□□□ -0.94
VPS4A-201ENST00000254950 IER3P46695 156 aa9.15□□□□□ -0.94
VPS4A-201ENST00000254950 BLCAPP62952 87 aa9.15□□□□□ -0.94
VPS4A-201ENST00000254950 TOMM20LQ6UXN7 152 aa9.15□□□□□ -0.94
VPS4A-201ENST00000254950 SIGLEC15Q6ZMC9 328 aa9.15□□□□□ -0.94
VPS4A-201ENST00000254950 SNURFLB1AK76 121 aa9.15□□□□□ -0.95
VPS4A-201ENST00000254950 ISLRO14498 428 aa9.15□□□□□ -0.95
VPS4A-201ENST00000254950 IGHV4-31P0DP07 118 aa9.15□□□□□ -0.95
VPS4A-201ENST00000254950 IGLV11-55A0A075B6I3 123 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 MYO9AB2RTY4 2548 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 CD81P60033 236 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 RPS20P60866 119 aaKnown RBP9.14□□□□□ -0.95
VPS4A-201ENST00000254950 MGAQ8IWI9 3026 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 WFDC11Q8NEX6 87 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 YTHDF2Q9Y5A9 579 aaKnown RBP9.14□□□□□ -0.95
VPS4A-201ENST00000254950 A0A087WWC5 75 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 K7EIM0 57 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 TSPOP30536 169 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 PDZD11Q5EBL8 140 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 MEGF9Q9H1U4 602 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 ZNF705FA8MVS1 300 aaPredicted RBP9.14□□□□□ -0.95
VPS4A-201ENST00000254950 GPX1P07203 203 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 ELANEP08246 267 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 ZNF705DP0CH99 300 aaPredicted RBP9.14□□□□□ -0.95
VPS4A-201ENST00000254950 ZNF705BP0CI00 300 aaPredicted RBP9.14□□□□□ -0.95
VPS4A-201ENST00000254950 RNF224P0DH78 156 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 ZNF295-AS1Q8N0V1 137 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 KLHL30-AS1Q8NEE0 82 aa9.14□□□□□ -0.95
VPS4A-201ENST00000254950 I3L2K1 104 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 CRYGCP07315 174 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 LYPD1Q8N2G4 141 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 EXOC3-AS1Q8N2X6 119 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 EBI3Q14213 229 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 TCF24Q7RTU0 167 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 DAZ1Q9NQZ3 744 aaKnown RBP9.13□□□□□ -0.95
VPS4A-201ENST00000254950 CDC42EP3Q9UKI2 254 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 PSG8Q9UQ74 426 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 KRTAP10-9P60411 292 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 NDPQ00604 133 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 OCC1Q8TAD7 63 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 ZFP30Q9Y2G7 519 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 HCFC1P51610 2035 aa9.13□□□□□ -0.95
VPS4A-201ENST00000254950 HSBP1O75506 76 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 MT-ND6P03923 174 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 NTF3P20783 257 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 SSBP2P81877 361 aaPredicted RBP9.12□□□□□ -0.95
VPS4A-201ENST00000254950 BCL6BQ8N143 479 aaPredicted RBP9.12□□□□□ -0.95
VPS4A-201ENST00000254950 POLQO75417 2590 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 A6NDX4 124 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 PGPEP1LA6NFU8 196 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 C9JQL5 133 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 HTN1P15515 57 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 LCNL1Q6ZST4 164 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 Q71RC1 249 aaPredicted RBP9.12□□□□□ -0.95
VPS4A-201ENST00000254950 SRD5A3Q9H8P0 318 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 TCRAP04437 139 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 CRISP2P16562 243 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 MDKP21741 143 aaPredicted RBP9.12□□□□□ -0.95
VPS4A-201ENST00000254950 PDE6HQ13956 83 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 CIARTQ8N365 385 aaPredicted RBP9.12□□□□□ -0.95
VPS4A-201ENST00000254950 TMEM18Q96B42 140 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 RHPN1-AS1Q9BWJ2 59 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 AKAP13Q12802 2813 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 SPANXN1Q5VSR9 72 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 ZNF343Q6P1L6 599 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 C9orf139Q6ZV77 190 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 ZNF491Q8N8L2 437 aa9.12□□□□□ -0.95
VPS4A-201ENST00000254950 ABCA12Q86UK0 2595 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 FAM181BA6NEQ2 426 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 C9JCJ5 164 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 SLC17A3O00476 420 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 IGKV1-17P01599 117 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 IGKV3-20P01619 116 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 IGHG2P01859 326 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 CRYGBP07316 175 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 RAX2Q96IS3 184 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 DERL1Q9BUN8 251 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 TGIF2-C20orf24A0A0A6YYL0 155 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 NDUFA4O00483 81 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 CD99P14209 185 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 FAM90A2PQ658T7 463 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 KLHDC1Q8N7A1 406 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 TMEM170AQ8WVE7 144 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 IL36BQ9NZH7 164 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 POLR3KQ9Y2Y1 108 aaPredicted RBP9.11□□□□□ -0.95
VPS4A-201ENST00000254950 GCGP01275 180 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 SYNJ2BPP57105 145 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 TMEM95Q3KNT9 176 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 LDLRAD2Q5SZI1 272 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 TUBA4BQ9H853 241 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 OSTCQ9NRP0 149 aa9.11□□□□□ -0.95
VPS4A-201ENST00000254950 C1orf194Q5T5A4 169 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 FA2HQ7L5A8 372 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 LYPD6BQ8NI32 183 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 PGLYRP4Q96LB8 373 aa9.1□□□□□ -0.95
VPS4A-201ENST00000254950 SLC25A2Q9BXI2 301 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms