RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MORN3Q6PF18 240 aaPredicted RBP10.85□□□□□ -0.67
LDLR-201ENST00000252444 LIME1Q9H400 295 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 TRBV19A0A075B6N1 114 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 IGHV3-66A0A0C4DH42 116 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 CD7P09564 240 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 IGLC1P0CG04 106 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 C5orf56Q8N8D9 126 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 MMP23AO75900 390 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 FAM231DQ6ZW35 169 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 Q86TA4 180 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 AP5S1Q9NUS5 200 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 IGHV3OR16-12A0A075B7B8 117 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 WT1-ASQ06250 92 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 TMEM256Q8N2U0 113 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 MRPS16Q9Y3D3 137 aaKnown RBP10.85□□□□□ -0.67
LDLR-201ENST00000252444 BATFQ16520 125 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 GPR179Q6PRD1 2367 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 A6NDX4 124 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 CIRBPQ14011 172 aaKnown RBP10.84□□□□□ -0.67
LDLR-201ENST00000252444 TMEM136Q6ZRR5 245 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 NCOR1O75376 2440 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 TRAV34A0A0B4J273 112 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 IGHG2P01859 326 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 FOSL1P15407 271 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 SRIP30626 198 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 INSL3P51460 131 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 LMO4P61968 165 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 TMEM170AQ8WVE7 144 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 C11orf52Q96A22 123 aa10.84□□□□□ -0.67
LDLR-201ENST00000252444 IGLV11-55A0A075B6I3 123 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 H3BTX0 84 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 FAM120AOSQ5T036 256 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 TRGV2A0A075B6R0 118 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 A6NDN8 102 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 OVOL3O00110 214 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 PRB1P04280 392 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 PRR20EP86478 221 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 PRR20CP86479 221 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 PRR20DP86480 221 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 PRR20BP86481 221 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 PRR20AP86496 221 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 SEPSECSQ9HD40 501 aaKnown RBP10.83□□□□□ -0.68
LDLR-201ENST00000252444 EBI3Q14213 229 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 FAM90A2PQ658T7 463 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 SPTA1P02549 2419 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 EP400Q96L91 3159 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 IGHV3-49A0A0A0MS15 119 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 SMPXQ9UHP9 88 aa10.83□□□□□ -0.68
LDLR-201ENST00000252444 HIGD1CA8MV81 97 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 DMRTA1Q5VZB9 504 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 FOXI2Q6ZQN5 318 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 ZNF502Q8TBZ5 544 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 ESPL1Q14674 2120 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 CACNA1HO95180 2353 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 SRSF1Q07955 248 aaKnown RBP eCLIP10.82□□□□□ -0.683e-6■■■□□ 14.8
LDLR-201ENST00000252444 C12orf57Q99622 126 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 SPXQ9BT56 116 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 ACACAQ13085 2346 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 NCKAP5O14513 1909 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 IGHV3OR16-13A0A075B7E8 117 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 IGHV3-74A0A0B4J1X5 117 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 J3QR89 54 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 CDX1P47902 265 aaPredicted RBP10.82□□□□□ -0.68
LDLR-201ENST00000252444 PRB3Q04118 309 aaPredicted RBP10.82□□□□□ -0.68
LDLR-201ENST00000252444 SPAG8Q99932 426 aaPredicted RBP10.82□□□□□ -0.68
LDLR-201ENST00000252444 AURKAIP1Q9NWT8 199 aaPredicted RBP10.82□□□□□ -0.68
LDLR-201ENST00000252444 HEATR1Q9H583 2144 aaKnown RBP10.82□□□□□ -0.68
LDLR-201ENST00000252444 TGIF2-C20orf24A0A0A6YYL0 155 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 CNTFRP26992 372 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 ZNF841Q6ZN19 808 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 TCF23Q7RTU1 214 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 DPH3P1Q9H4G8 78 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 DIRC3C9JPN6 131 aa10.82□□□□□ -0.68
LDLR-201ENST00000252444 IGHV7-81A0A0B4J1V7 117 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 CIDEAO60543 219 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 TRGC2P03986 189 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 GNG5P63218 68 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 Q8N7P7 452 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 C4orf3Q8WVX3 66 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 VSIRQ9H7M9 311 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 SLC25A2Q9BXI2 301 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 PHF3Q92576 2039 aaKnown RBP10.81□□□□□ -0.68
LDLR-201ENST00000252444 Q8N9W7 124 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 KMT2EQ8IZD2 1858 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 C16orf54Q6UWD8 224 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 OR8A1Q8NGG7 326 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 OCC1Q8TAD7 63 aa10.81□□□□□ -0.68
LDLR-201ENST00000252444 IGLV2-23P01705 113 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 SYNJ2BPP57105 145 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 MRAP2Q96G30 205 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 TRAV5A0A0B4J249 113 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 M0R381 172 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 PLA2G2AP14555 144 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 SEC11AP67812 179 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 LINC01551Q86U37 167 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 LSM4Q9Y4Z0 139 aaKnown RBP10.8□□□□□ -0.68
LDLR-201ENST00000252444 CNOT1A5YKK6 2376 aaKnown RBP10.8□□□□□ -0.68
LDLR-201ENST00000252444 SLAQ13239 276 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 NUDT10Q8NFP7 164 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 ST6GALNAC6Q969X2 333 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms