RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 TCRBV4S1A1TA0A5B7 111 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 TMEM89A2RUT3 159 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 CXorf65A6NEN9 183 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 PHOX2AO14813 284 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 IL4P05112 153 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 PFN1P07737 140 aaKnown RBP6.82□□□□□ -1.32
VPS4B-201ENST00000238497 CNN1P51911 297 aaKnown RBP6.82□□□□□ -1.32
VPS4B-201ENST00000238497 TMEM30BQ3MIR4 351 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 PATE2Q6UY27 113 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 EXOC3-AS1Q8N2X6 119 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 CMTM2Q8TAZ6 248 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 ANAPC16Q96DE5 110 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 NAT8BQ9UHF3 227 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 OR2T8A6NH00 312 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 SNURFLB1AK76 121 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 H3BUX3 64 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 NBR2O15453 112 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 NBEAP1P0C6P0 100 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 CX3CL1P78423 397 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 Q6YL49 198 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 BAGE3Q86Y29 109 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 OR1L4Q8NGR5 311 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 CACNG8Q8WXS5 425 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 ZNF503Q96F45 646 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 LINC00574Q9H8X3 128 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 MUC21A0A0G2JKD1 596 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 MUC21A0A140T8X8 626 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 K7EN84 100 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 ISLRO14498 428 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 FOLR2P14207 255 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 COMPP49747 757 aaPredicted RBP6.81□□□□□ -1.32
VPS4B-201ENST00000238497 MUC21Q5SSG8 566 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 TEX38Q6PEX7 206 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 C11orf44Q8N8P7 122 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 LY6G5BQ8NDX9 201 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 TMSB15BA0A087X1C1 80 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 M0R1W7 72 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 IBA57Q5T440 356 aaKnown RBP6.81□□□□□ -1.32
VPS4B-201ENST00000238497 ETFRF1Q6IPR1 90 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 C9orf139Q6ZV77 190 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 TEX45Q8NA69 505 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 OR1L6Q8NGR2 347 aa6.81□□□□□ -1.32
VPS4B-201ENST00000238497 PACRGQ96M98 296 aaPredicted RBP6.81□□□□□ -1.32
VPS4B-201ENST00000238497 UBE2CO00762 179 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 SCGB1D1O95968 90 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 AMY1AP04745 511 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 HOXA5P20719 270 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 UBE2E1P51965 193 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 PRNTQ86SH4 94 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 LINC00311Q8N616 119 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 RNASEH2CQ8TDP1 164 aaKnown RBP6.8□□□□□ -1.32
VPS4B-201ENST00000238497 C17orf77Q96MU5 243 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 HIGD1AQ9Y241 93 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 S100A8P05109 93 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 FABP1P07148 127 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 HIST1H1BP16401 226 aaKnown RBP6.8□□□□□ -1.32
VPS4B-201ENST00000238497 NTF3P20783 257 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 CDX1P47902 265 aaPredicted RBP6.8□□□□□ -1.32
VPS4B-201ENST00000238497 PCP4P48539 62 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 ZNF137PP52743 207 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 UNQ5815/PRO19632Q6UWF5 114 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 TMEM256Q8N2U0 113 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 DAZAP1Q96EP5 407 aaKnown RBP6.8□□□□□ -1.32
VPS4B-201ENST00000238497 SLC25A2Q9BXI2 301 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 SRD5A3Q9H8P0 318 aa6.8□□□□□ -1.32
VPS4B-201ENST00000238497 ZNF705FA8MVS1 300 aaPredicted RBP6.79□□□□□ -1.32
VPS4B-201ENST00000238497 ZNF705DP0CH99 300 aaPredicted RBP6.79□□□□□ -1.32
VPS4B-201ENST00000238497 ZNF705BP0CI00 300 aaPredicted RBP6.79□□□□□ -1.32
VPS4B-201ENST00000238497 GPX4P36969 197 aaPredicted RBP6.79□□□□□ -1.32
VPS4B-201ENST00000238497 RPEL1Q2QD12 228 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 GOLT1AQ6ZVE7 132 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 SAMD10Q9BYL1 202 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 G3V318 75 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 AARDQ4LEZ3 155 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 PYY3Q5JQD4 70 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 SHISA2Q6UWI4 295 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 C8orf46Q8TAG6 207 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 TNFRSF14Q92956 283 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 RNF114Q9Y508 228 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 F11RQ9Y624 299 aaKnown RBP6.79□□□□□ -1.32
VPS4B-201ENST00000238497 TRBV24-1A0A075B6N3 115 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 IGKV1D-37A0A075B6S9 117 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 M0R3E3 92 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 CORTO00230 105 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 GZMBP10144 247 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 SELENOTP62341 195 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 SSBP4Q9BWG4 385 aaPredicted RBP6.79□□□□□ -1.32
VPS4B-201ENST00000238497 C1RLQ9NZP8 487 aa6.79□□□□□ -1.32
VPS4B-201ENST00000238497 PKD1L1Q8TDX9 2849 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 GATCO43716 136 aaKnown RBP6.78□□□□□ -1.32
VPS4B-201ENST00000238497 G0S2P27469 103 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 OR2D3Q8NGH3 330 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 OR1P1Q8NH06 330 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 VPREB3Q9UKI3 123 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 IFITM10A6NMD0 228 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 J3KRW8 73 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 GPR183P32249 361 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 ADMP35318 185 aa6.78□□□□□ -1.32
VPS4B-201ENST00000238497 RPL15P61313 204 aaKnown RBP6.78□□□□□ -1.32
VPS4B-201ENST00000238497 RPL11P62913 178 aaKnown RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms