RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 IQCDQ96DY2 449 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 RPAP3Q9H6T3 665 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 KMT5AQ9NQR1 393 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 MTRF1LQ9UGC7 380 aaKnown RBP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 MAFFQ9ULX9 164 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 ZC3H4Q9UPT8 1303 aaKnown RBP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 RNASEH2AO75792 299 aaKnown RBP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 SCNN1AP37088 669 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 ZNF713Q8N859 430 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-221ENST00000641996 SUN5Q8TC36 379 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 RAPGEF5Q92565 580 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 HVCN1Q96D96 273 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 SEZ6LQ9BYH1 1024 aa4.03□□□□□ -1.76
SCN1A-221ENST00000641996 SKILP12757 684 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 CEP78Q5JTW2 689 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 CAPS2Q9BXY5 557 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 TRIM7Q9C029 511 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 SENP3Q9H4L4 574 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 POTEFA5A3E0 1075 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 TNNI2P48788 182 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 GUCY2FP51841 1108 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 LBRQ14739 615 aaKnown RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 C7orf57Q8NEG2 295 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 SMARCC2Q8TAQ2 1214 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 DHRS1Q96LJ7 313 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 YIPF3Q9GZM5 350 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 MED4Q9NPJ6 270 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 COQ3Q9NZJ6 369 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 TIMM44O43615 452 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 VDRP11473 427 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 NEK2P51955 445 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 EIF2B5Q13144 721 aaKnown RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 RAVER1Q8IY67 606 aaKnown RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 GALNT6Q8NCL4 622 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 JPH2Q9BR39 696 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 VRTNQ9H8Y1 702 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 EMC3Q9P0I2 261 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 ATP6V0A2Q9Y487 856 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 ANKRD33BA6NCL7 494 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 PRSS47A8MTI9 375 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 RASA4BC9J798 803 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 ATP6V1G1O75348 118 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 BRD8Q9H0E9 1235 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 KRT5P13647 590 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 EFR3AQ14156 821 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 PARP10Q53GL7 1025 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 ESF1Q9H501 851 aaKnown RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 VPS45Q9NRW7 570 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 LZTS1Q9Y250 596 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 CREBBPQ92793 2442 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 EXOC5O00471 708 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 TBX3O15119 743 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 MYBP10242 640 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 ADCY2Q08462 1091 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 IFRD2Q12894 506 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 RALGDSQ12967 914 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 TMEM87AQ8NBN3 555 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 ALKBH8Q96BT7 664 aaKnown RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 SPTLC2O15270 562 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 BAG4O95429 457 aaKnown RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 TOP1P11387 765 aaKnown RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 PLIN5Q00G26 463 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 LRRC41Q15345 812 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 SH2D4BQ5SQS7 431 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 CENPQQ7L2Z9 268 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 CDHR1Q96JP9 859 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 ERLIN2O94905 339 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 SFSWAPQ12872 951 aaKnown RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 C1QTNF12Q5T7M4 302 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 NEK11Q8NG66 645 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 MAK16Q9BXY0 300 aaKnown RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 HCLS1P14317 486 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 PPP1R2P41236 205 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 MAJINQ3KP22 176 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 PPP1R2P3Q6NXS1 205 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 RASGRP2Q7LDG7 609 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 TCP11Q8WWU5 503 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 RUFY2Q8WXA3 655 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 RUNDC3BQ96NL0 473 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 MAPK1P28482 360 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 RFWD2Q8NHY2 731 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 NLRP7Q8WX94 980 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 IFT74Q96LB3 600 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 FANCFQ9NPI8 374 aa4.02□□□□□ -1.77
SCN1A-221ENST00000641996 AATFQ9NY61 560 aaKnown RBP eCLIP4.02□□□□□ -1.77
SCN1A-221ENST00000641996 POM121CA8CG34 1229 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 STAM2O75886 525 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 FMNL1O95466 1100 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 KRT7P08729 469 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 DDX5P17844 614 aaKnown RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SMARCA1P28370 1054 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 NOLC1Q14978 699 aaKnown RBP eCLIP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 CCT6BQ92526 530 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 YIPF2Q9BWQ6 316 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SPECC1L-ADORA2AF8WAN1 911 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 IVLP07476 585 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 POTEIP0CG38 1075 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SLC44A2Q8IWA5 706 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PEX5LQ8IYB4 626 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 NEUROD4Q9HD90 331 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms