RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DAGLAQ9Y4D2 1042 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 U3KQE9 123 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 PITPNM2Q9BZ72 1349 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 POM121CA8CG34 1229 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 CYP11A1P05108 521 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 RPLP1P05386 114 aaKnown RBP1.75□□□□□ -2.13
VPS35-212ENST00000640313 MAOBP27338 520 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 GDNFP39905 211 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 ZP2Q05996 745 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 FKBP5Q13451 457 aaPredicted RBP1.75□□□□□ -2.13
VPS35-212ENST00000640313 POU4F3Q15319 338 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 AKAP4Q5JQC9 854 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 PRRT2Q7Z6L0 340 aaPredicted RBP1.75□□□□□ -2.13
VPS35-212ENST00000640313 C1orf127Q8N9H9 656 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 MARCH10Q8NA82 808 aaPredicted RBP1.75□□□□□ -2.13
VPS35-212ENST00000640313 GPR152Q8TDT2 470 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 KCNN1Q92952 543 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 SLC26A8Q96RN1 970 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 DIRC2Q96SL1 478 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 OSMRQ99650 979 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 BHLHE41Q9C0J9 482 aaPredicted RBP1.75□□□□□ -2.13
VPS35-212ENST00000640313 ZCCHC4Q9H5U6 513 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 DCP1AQ9NPI6 582 aaPredicted RBP1.75□□□□□ -2.13
VPS35-212ENST00000640313 RAD18Q9NS91 495 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 KANSL3Q9P2N6 904 aa1.75□□□□□ -2.13
VPS35-212ENST00000640313 MAFBQ9Y5Q3 323 aaPredicted RBP1.75□□□□□ -2.13
VPS35-212ENST00000640313 ADAMTS20P59510 1910 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 CNTNAP4Q9C0A0 1308 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L15C9J2P7 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L10C9JJH3 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L13C9JLJ4 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L12C9JPN9 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L11C9JVI0 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L21D6R901 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L18D6R9N7 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L22D6RA61 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L17D6RBQ6 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L19D6RCP7 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L20D6RJB6 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 IGF2BP3O00425 579 aaKnown RBP eCLIP1.74□□□□□ -2.13
VPS35-212ENST00000640313 SUV39H1O43463 412 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 AOC2O75106 756 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 CTSBP07858 339 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 BMP7P18075 431 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 USP17L24Q0WX57 530 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 CDK5R2Q13319 367 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 IKZF1Q13422 519 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 ZXDCQ2QGD7 858 aaPredicted RBP1.74□□□□□ -2.13
VPS35-212ENST00000640313 ARHGAP27Q6ZUM4 889 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 FAM214BQ7L5A3 538 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 ZNF438Q7Z4V0 828 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 ZKSCAN3Q9BRR0 538 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 DUSP23Q9BVJ7 150 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 IRF2BPLQ9H1B7 796 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 EPB41L4BQ9H329 900 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 LGR6Q9HBX8 967 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 C19orf73Q9NVV2 129 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 AP4E1Q9UPM8 1137 aa1.74□□□□□ -2.13
VPS35-212ENST00000640313 ZBTB39O15060 712 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 LEFTY1O75610 366 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 CELA3BP08861 270 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 EDN3P14138 238 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 ZNF423Q2M1K9 1284 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 SPACA3Q8IXA5 215 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 ABTB2Q8N961 1025 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 BAHD1Q8TBE0 780 aaPredicted RBP1.73□□□□□ -2.13
VPS35-212ENST00000640313 FAM200AQ8TCP9 573 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 NUDT16Q96DE0 195 aaKnown RBP1.73□□□□□ -2.13
VPS35-212ENST00000640313 CCDC120Q96HB5 630 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 HEXIM2Q96MH2 286 aaKnown RBP1.73□□□□□ -2.13
VPS35-212ENST00000640313 WDR18Q9BV38 432 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 XYLT2Q9H1B5 865 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 CHRDQ9H2X0 955 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 CLEC4MQ9H2X3 399 aaPredicted RBP1.73□□□□□ -2.13
VPS35-212ENST00000640313 VRTNQ9H8Y1 702 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 KCNK12Q9HB15 430 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 STIM2Q9P246 746 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 PPP1R9AQ9ULJ8 1098 aa1.73□□□□□ -2.13
VPS35-212ENST00000640313 TMPRSS2O15393 492 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 RAD21O60216 631 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 CLCN7P51798 805 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 PCDH1Q08174 1060 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 OCLNQ16625 522 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 NKPD1Q17RQ9 610 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 ERICH6BQ5W0A0 696 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 SMYD4Q8IYR2 804 aaPredicted RBP1.72□□□□□ -2.13
VPS35-212ENST00000640313 DDX54Q8TDD1 881 aaKnown RBP1.72□□□□□ -2.13
VPS35-212ENST00000640313 ASAP3Q8TDY4 903 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 POM121Q96HA1 1249 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 CRELD1Q96HD1 420 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 FANCD2OSQ96PS1 177 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 CORO1BQ9BR76 489 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 TRIM56Q9BRZ2 755 aaKnown RBP1.72□□□□□ -2.13
VPS35-212ENST00000640313 ATXN3LQ9H3M9 355 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 PCOLCE2Q9UKZ9 415 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 MYRFQ9Y2G1 1151 aa1.72□□□□□ -2.13
VPS35-212ENST00000640313 A0A096LPE4 126 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 A0A1W2PPZ6 126 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 OVOL3O00110 214 aa1.71□□□□□ -2.14
VPS35-212ENST00000640313 TRIM13O60858 407 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms