RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 GRIK1P39086 918 aa8.13□□□□□ -1.11
CD44-239ENST00000639002 ZAR1Q86SH2 424 aa8.13□□□□□ -1.11
CD44-239ENST00000639002 C3orf58Q8NDZ4 430 aa8.13□□□□□ -1.11
CD44-239ENST00000639002 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.12□□□□□ -1.11
CD44-239ENST00000639002 TMPRSS2O15393 492 aa8.12□□□□□ -1.11
CD44-239ENST00000639002 RAB6AP20340 208 aa8.12□□□□□ -1.11
CD44-239ENST00000639002 ASPAP45381 313 aa8.12□□□□□ -1.11
CD44-239ENST00000639002 FMR1Q06787 632 aaKnown RBP eCLIP8.12□□□□□ -1.11
CD44-239ENST00000639002 KCNA1Q09470 495 aa8.12□□□□□ -1.11
CD44-239ENST00000639002 PDE3AQ14432 1141 aa8.12□□□□□ -1.11
CD44-239ENST00000639002 HP1BP3Q5SSJ5 553 aaPredicted RBP8.12□□□□□ -1.11
CD44-239ENST00000639002 C1GALT1Q9NS00 363 aa8.12□□□□□ -1.11
CD44-239ENST00000639002 WWC3Q9ULE0 1092 aa8.12□□□□□ -1.11
CD44-239ENST00000639002 AP4E1Q9UPM8 1137 aa8.12□□□□□ -1.11
CD44-239ENST00000639002 PCDHGC5Q9Y5F6 944 aa8.12□□□□□ -1.11
CD44-239ENST00000639002 OAS3Q9Y6K5 1087 aaKnown RBP8.12□□□□□ -1.11
CD44-239ENST00000639002 FAM170BA6NMN3 283 aa8.11□□□□□ -1.11
CD44-239ENST00000639002 GSTP1P09211 210 aaKnown RBP8.11□□□□□ -1.11
CD44-239ENST00000639002 TBC1D32Q96NH3 1257 aa8.11□□□□□ -1.11
CD44-239ENST00000639002 ASB16Q96NS5 453 aa8.11□□□□□ -1.11
CD44-239ENST00000639002 TRAIPQ9BWF2 469 aa8.11□□□□□ -1.11
CD44-239ENST00000639002 KRTAP9-2Q9BYQ4 174 aa8.11□□□□□ -1.11
CD44-239ENST00000639002 OSBPL7Q9BZF2 842 aa8.11□□□□□ -1.11
CD44-239ENST00000639002 ATG3Q9NT62 314 aa8.11□□□□□ -1.11
CD44-239ENST00000639002 TMEM39AQ9NV64 488 aa8.11□□□□□ -1.11
CD44-239ENST00000639002 CRIM1Q9NZV1 1036 aa8.11□□□□□ -1.11
CD44-239ENST00000639002 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.1□□□□□ -1.11
CD44-239ENST00000639002 XRCC5P13010 732 aaKnown RBP8.1□□□□□ -1.11
CD44-239ENST00000639002 FOSL1P15407 271 aa8.1□□□□□ -1.11
CD44-239ENST00000639002 GP2P55259 537 aaKnown RBP8.1□□□□□ -1.11
CD44-239ENST00000639002 MSMPQ1L6U9 139 aa8.1□□□□□ -1.11
CD44-239ENST00000639002 YIPF2Q9BWQ6 316 aa8.1□□□□□ -1.11
CD44-239ENST00000639002 OSBPL1AQ9BXW6 950 aa8.1□□□□□ -1.11
CD44-239ENST00000639002 PPP4R2Q9NY27 417 aa8.1□□□□□ -1.11
CD44-239ENST00000639002 GPN3Q9UHW5 284 aaPredicted RBP8.1□□□□□ -1.11
CD44-239ENST00000639002 AKAP2Q9Y2D5 859 aa8.1□□□□□ -1.11
CD44-239ENST00000639002 LEMD3Q9Y2U8 911 aa8.1□□□□□ -1.11
CD44-239ENST00000639002 MAPK8P45983 427 aa8.09□□□□□ -1.11
CD44-239ENST00000639002 MAP7Q14244 749 aa8.09□□□□□ -1.11
CD44-239ENST00000639002 KIF4BQ2VIQ3 1234 aa8.09□□□□□ -1.11
CD44-239ENST00000639002 NFXL1Q6ZNB6 911 aa8.09□□□□□ -1.11
CD44-239ENST00000639002 FANCD2OSQ96PS1 177 aa8.09□□□□□ -1.11
CD44-239ENST00000639002 DISC1Q9NRI5 854 aa8.09□□□□□ -1.11
CD44-239ENST00000639002 LGR6Q9HBX8 967 aa8.08□□□□□ -1.12
CD44-239ENST00000639002 KRT82Q9NSB4 513 aa8.08□□□□□ -1.12
CD44-239ENST00000639002 ARNTP27540 789 aa8.07□□□□□ -1.12
CD44-239ENST00000639002 PPP2R3AQ06190 1150 aa8.07□□□□□ -1.12
CD44-239ENST00000639002 ZNF252P-AS1Q0IIN9 211 aa8.07□□□□□ -1.12
CD44-239ENST00000639002 CPSF6Q16630 551 aaKnown RBP eCLIP8.07□□□□□ -1.12
CD44-239ENST00000639002 MPRIPQ6WCQ1 1025 aa8.07□□□□□ -1.12
CD44-239ENST00000639002 SULF2Q8IWU5 870 aa8.07□□□□□ -1.12
CD44-239ENST00000639002 ZSCAN29Q8IWY8 852 aaPredicted RBP8.07□□□□□ -1.12
CD44-239ENST00000639002 GIMAP7Q8NHV1 300 aa8.07□□□□□ -1.12
CD44-239ENST00000639002 NECAB3Q96P71 396 aaPredicted RBP8.07□□□□□ -1.12
CD44-239ENST00000639002 CACNA2D2Q9NY47 1150 aa8.07□□□□□ -1.12
CD44-239ENST00000639002 DAGLAQ9Y4D2 1042 aa8.07□□□□□ -1.12
CD44-239ENST00000639002 KRTAP9-6A0A140TA67 174 aa8.06□□□□□ -1.12
CD44-239ENST00000639002 WNT11O96014 354 aa8.06□□□□□ -1.12
CD44-239ENST00000639002 BMP6P22004 513 aa8.06□□□□□ -1.12
CD44-239ENST00000639002 ID3Q02535 119 aa8.06□□□□□ -1.12
CD44-239ENST00000639002 ZNF765Q7L2R6 523 aa8.06□□□□□ -1.12
CD44-239ENST00000639002 FBF1Q8TES7 1133 aa8.06□□□□□ -1.12
CD44-239ENST00000639002 KCNB2Q92953 911 aa8.06□□□□□ -1.12
CD44-239ENST00000639002 METTL22Q9BUU2 404 aaPredicted RBP8.06□□□□□ -1.12
CD44-239ENST00000639002 COL17A1Q9UMD9 1497 aaPredicted RBP8.06□□□□□ -1.12
CD44-239ENST00000639002 ENC1O14682 589 aa8.05□□□□□ -1.12
CD44-239ENST00000639002 PAGE1O75459 146 aa8.05□□□□□ -1.12
CD44-239ENST00000639002 SLFN14P0C7P3 912 aa8.05□□□□□ -1.12
CD44-239ENST00000639002 NME2P22392 152 aa8.05□□□□□ -1.12
CD44-239ENST00000639002 RASIP1Q5U651 963 aa8.05□□□□□ -1.12
CD44-239ENST00000639002 MCTP1Q6DN14 999 aa8.05□□□□□ -1.12
CD44-239ENST00000639002 CYP26A1O43174 497 aa8.04□□□□□ -1.12
CD44-239ENST00000639002 PRNPP04156 253 aa8.04□□□□□ -1.12
CD44-239ENST00000639002 P4HBP07237 508 aaKnown RBP8.04□□□□□ -1.12
CD44-239ENST00000639002 TTLL4Q14679 1199 aa8.04□□□□□ -1.12
CD44-239ENST00000639002 OGFOD3Q6PK18 319 aa8.04□□□□□ -1.12
CD44-239ENST00000639002 TPTE2Q6XPS3 522 aa8.04□□□□□ -1.12
CD44-239ENST00000639002 GRIN3AQ8TCU5 1115 aa8.04□□□□□ -1.12
CD44-239ENST00000639002 CCDC39Q9UFE4 941 aa8.04□□□□□ -1.12
CD44-239ENST00000639002 FBXO24O75426 580 aa8.03□□□□□ -1.12
CD44-239ENST00000639002 NEFMP07197 916 aa8.03□□□□□ -1.12
CD44-239ENST00000639002 GSTT1P30711 240 aa8.03□□□□□ -1.12
CD44-239ENST00000639002 ZC3H12AQ5D1E8 599 aaKnown RBP8.03□□□□□ -1.12
CD44-239ENST00000639002 MAP1SQ66K74 1059 aaPredicted RBP8.03□□□□□ -1.12
CD44-239ENST00000639002 ALG1LQ6GMV1 187 aa8.03□□□□□ -1.12
CD44-239ENST00000639002 GPBAR1Q8TDU6 330 aa8.03□□□□□ -1.12
CD44-239ENST00000639002 ATXN3LQ9H3M9 355 aa8.03□□□□□ -1.12
CD44-239ENST00000639002 ZC3H7BQ9UGR2 993 aaKnown RBP8.03□□□□□ -1.12
CD44-239ENST00000639002 CDK5R2Q13319 367 aa8.02□□□□□ -1.13
CD44-239ENST00000639002 DUSP27Q5VZP5 1158 aa8.02□□□□□ -1.13
CD44-239ENST00000639002 SMYD4Q8IYR2 804 aaPredicted RBP8.02□□□□□ -1.13
CD44-239ENST00000639002 ANKRD24Q8TF21 1146 aa8.02□□□□□ -1.13
CD44-239ENST00000639002 SRCIN1Q9C0H9 1055 aa8.02□□□□□ -1.13
CD44-239ENST00000639002 HCLS1P14317 486 aaPredicted RBP8.01□□□□□ -1.13
CD44-239ENST00000639002 COL19A1Q14993 1142 aa8.01□□□□□ -1.13
CD44-239ENST00000639002 ADGRE2Q9UHX3 823 aa8.01□□□□□ -1.13
CD44-239ENST00000639002 GIPC1O14908 333 aa8□□□□□ -1.13
CD44-239ENST00000639002 TAL1P17542 331 aaPredicted RBP8□□□□□ -1.13
CD44-239ENST00000639002 IRAK1P51617 712 aa8□□□□□ -1.13
CD44-239ENST00000639002 CYP27A1Q02318 531 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms