RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 GSDMDP57764 484 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 ODR4Q5SWX8 454 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 MSL1Q68DK7 614 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 FSIP1Q8NA03 581 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 CCDC110Q8TBZ0 833 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 XAGE3Q8WTP9 111 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 PKD2L1Q9P0L9 805 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 PI4KAP2A4QPH2 592 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 HIBADHP31937 336 aaKnown RBP6.88□□□□□ -1.31
SCN1A-217ENST00000637988 NBPF1Q3BBV0 1214 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 MAATS1Q7Z4T9 603 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 PI4KAP1Q8N8J0 262 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 MICAL1Q8TDZ2 1067 aa6.88□□□□□ -1.31
SCN1A-217ENST00000637988 SAP30BPQ9UHR5 308 aaKnown RBP6.88□□□□□ -1.31
SCN1A-217ENST00000637988 DUOX2Q9NRD8 1548 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 YTHDC2Q9H6S0 1430 aaKnown RBP6.87□□□□□ -1.31
SCN1A-217ENST00000637988 ARHGEF35A5YM69 484 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 GTF2F1P35269 517 aaKnown RBP eCLIP6.87□□□□□ -1.31
SCN1A-217ENST00000637988 ITIH3Q06033 890 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 CCDC183Q5T5S1 534 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 SLC17A8Q8NDX2 589 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 KIF9Q9HAQ2 790 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 PNMA3Q9UL41 463 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 CCPG1Q9ULG6 757 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 AKR1B10O60218 316 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 VPS52Q8N1B4 723 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 PDE4DQ08499 809 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 NEK11Q8NG66 645 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 MCMDC2Q4G0Z9 681 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 FAM196AQ6ZSG2 479 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 NOP9Q86U38 636 aaKnown RBP6.87□□□□□ -1.31
SCN1A-217ENST00000637988 TMEM57Q8N5G2 664 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 GPR161Q8N6U8 529 aaKnown RBP6.87□□□□□ -1.31
SCN1A-217ENST00000637988 KIF18AQ8NI77 898 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 LBHD1Q9BQE6 289 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-217ENST00000637988 MTUS1Q9ULD2 1270 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 HSF2BPO75031 334 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 POLR2BP30876 1174 aaKnown RBP6.87□□□□□ -1.31
SCN1A-217ENST00000637988 IDI1Q13907 227 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 C2orf69Q8N8R5 385 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 FAM107BQ9H098 131 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 SWAP70Q9UH65 585 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 ABCC1P33527 1531 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 DYNC1I1O14576 645 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 PPFIA3O75145 1194 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 KRT9P35527 623 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 SLC1A4P43007 532 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 ZYXQ15942 572 aaKnown RBP6.87□□□□□ -1.31
SCN1A-217ENST00000637988 RILPL1Q5EBL4 403 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 C2CD5Q86YS7 1000 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 LZTS2Q9BRK4 669 aa6.87□□□□□ -1.31
SCN1A-217ENST00000637988 TSPYL2Q9H2G4 693 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-217ENST00000637988 PDE6AP16499 860 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 PTPREP23469 700 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 FBF1Q8TES7 1133 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 ATRIPQ8WXE1 791 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 ALG1Q9BT22 464 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 GPCPD1Q9NPB8 672 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 CHPF2Q9P2E5 772 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 N4BP3O15049 544 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 IREB2P48200 963 aaKnown RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 PTPN14Q15678 1187 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 PSPC1Q8WXF1 523 aaKnown RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 PAG1Q9NWQ8 432 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 IPO11Q9UI26 975 aaKnown RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 WDR17Q8IZU2 1322 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 URB2Q14146 1524 aaKnown RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 ASXL2Q76L83 1435 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 ZSCAN20P17040 1043 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 SYKP43405 635 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 PPP1R7Q15435 360 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 COPS6Q7L5N1 327 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 ANKS4BQ8N8V4 417 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 NFATC2IPQ8NCF5 419 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 KCNG4Q8TDN1 519 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 PARD3BQ8TEW8 1205 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 CHURC1Q8WUH1 139 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 TACC3Q9Y6A5 838 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 XPOTO43592 962 aaKnown RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 KRT19P08727 400 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 SPAG1Q07617 926 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 PUM3Q15397 648 aaKnown RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 CTR9Q6PD62 1173 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 NCAPG2Q86XI2 1143 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 ZBTB8OSQ8IWT0 167 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 ATP8B3O60423 1300 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 CAPN9O14815 690 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 PPP1R2P41236 205 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 SEL1L2Q5TEA6 688 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 TTC30AQ86WT1 665 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 EXOC8Q8IYI6 725 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 GANCQ8TET4 914 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 TSGA10Q9BZW7 698 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 CPXCR1Q8N123 301 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 NKTRP30414 1462 aaKnown RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 NOS1P29475 1434 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 CHMP2AO43633 222 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 NEMFO60524 1076 aa6.86□□□□□ -1.31
SCN1A-217ENST00000637988 HEXIM1O94992 359 aaKnown RBP6.86□□□□□ -1.31
SCN1A-217ENST00000637988 CAVIN2O95810 425 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms