RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 MOB2Q70IA6 237 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLN3-261ENST00000637686 ANTXR1Q9H6X2 564 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 USP40Q9NVE5 1235 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 TMOD2Q9NZR1 351 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 GAKO14976 1311 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 LDHCP07864 332 aa12□□□□□ -0.49
CLN3-261ENST00000637686 BTDP43251 543 aa12□□□□□ -0.49
CLN3-261ENST00000637686 VEGFBP49765 207 aa12□□□□□ -0.49
CLN3-261ENST00000637686 NUCB1Q02818 461 aa12□□□□□ -0.49
CLN3-261ENST00000637686 GRM1Q13255 1194 aa12□□□□□ -0.49
CLN3-261ENST00000637686 PRKG1Q13976 671 aa12□□□□□ -0.49
CLN3-261ENST00000637686 TTLL12Q14166 644 aaPredicted RBP12□□□□□ -0.49
CLN3-261ENST00000637686 NBPF12Q5TAG4 269 aaPredicted RBP12□□□□□ -0.49
CLN3-261ENST00000637686 CYP4F22Q6NT55 531 aa12□□□□□ -0.49
CLN3-261ENST00000637686 DNAJC2Q99543 621 aaKnown RBP12□□□□□ -0.49
CLN3-261ENST00000637686 TMEM39BQ9GZU3 492 aa12□□□□□ -0.49
CLN3-261ENST00000637686 BOLA2Q9H3K6 86 aa12□□□□□ -0.49
CLN3-261ENST00000637686 FZD1Q9UP38 647 aa12□□□□□ -0.49
CLN3-261ENST00000637686 MROH7-TTC4A0A0A0MT08 1334 aa12□□□□□ -0.49
CLN3-261ENST00000637686 GPR75-ASB3A0A0A6YYF3 556 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 UBE2Q2LH0YL09 131 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 IDH1O75874 414 aaKnown RBP11.99□□□□□ -0.49
CLN3-261ENST00000637686 ATP5JP18859 108 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 FKBP1BP68106 108 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 NFIAQ12857 509 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 SUPT20HL1Q3ZLR7 823 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 ANKRD45Q5TZF3 282 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 FKBP1CQ5VVH2 108 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 NAA16Q6N069 864 aaPredicted RBP11.99□□□□□ -0.49
CLN3-261ENST00000637686 FAM83AQ86UY5 434 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 CDAN1Q8IWY9 1227 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 HHIPL1Q96JK4 782 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 TEPSINQ96N21 525 aa11.99□□□□□ -0.49
CLN3-261ENST00000637686 WDR33Q9C0J8 1336 aaKnown RBP11.99□□□□□ -0.49
CLN3-261ENST00000637686 MYO5AQ9Y4I1 1855 aaKnown RBP11.99□□□□□ -0.49
CLN3-261ENST00000637686 GOLIM4O00461 696 aa11.98□□□□□ -0.49
CLN3-261ENST00000637686 TCP10Q12799 353 aa11.98□□□□□ -0.49
CLN3-261ENST00000637686 TTF1Q15361 905 aaPredicted RBP11.98□□□□□ -0.49
CLN3-261ENST00000637686 ARMC9Q7Z3E5 817 aa11.98□□□□□ -0.49
CLN3-261ENST00000637686 JMYQ8N9B5 988 aa11.98□□□□□ -0.49
CLN3-261ENST00000637686 EDC3Q96F86 508 aaKnown RBP11.98□□□□□ -0.49
CLN3-261ENST00000637686 CAPNS2Q96L46 248 aa11.98□□□□□ -0.49
CLN3-261ENST00000637686 ECHDC1Q9NTX5 307 aa11.98□□□□□ -0.49
CLN3-261ENST00000637686 ZBTB47Q9UFB7 747 aaPredicted RBP11.98□□□□□ -0.49
CLN3-261ENST00000637686 FAM198AQ9UFP1 575 aa11.98□□□□□ -0.49
CLN3-261ENST00000637686 ANGEL1Q9UNK9 670 aaKnown RBP11.98□□□□□ -0.49
CLN3-261ENST00000637686 PAPPA2Q9BXP8 1791 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 SSC5DA1L4H1 1573 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 PPP1R12BO60237 982 aaPredicted RBP11.97□□□□□ -0.49
CLN3-261ENST00000637686 IGSF3O75054 1194 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 CYP7A1P22680 504 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 ECE1P42892 770 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 RHBDL3P58872 404 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 MAP3K12Q12852 859 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 TSHZ3Q63HK5 1081 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 RGMBQ6NW40 437 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 ADGRA1Q86SQ6 560 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 CHD1LQ86WJ1 897 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 ZFPM1Q8IX07 1006 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 MAGEB6Q8N7X4 407 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 OTUD7AQ8TE49 926 aaPredicted RBP11.97□□□□□ -0.49
CLN3-261ENST00000637686 FAM151AQ8WW52 585 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 GPATCH3Q96I76 525 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 HAUS7Q99871 368 aa11.97□□□□□ -0.49
CLN3-261ENST00000637686 NOL10Q9BSC4 688 aaKnown RBP11.97□□□□□ -0.49
CLN3-261ENST00000637686 AATFQ9NY61 560 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLN3-261ENST00000637686 AOC2O75106 756 aa11.96□□□□□ -0.49
CLN3-261ENST00000637686 USP2O75604 605 aaPredicted RBP11.96□□□□□ -0.49
CLN3-261ENST00000637686 WDHD1O75717 1129 aaPredicted RBP11.96□□□□□ -0.49
CLN3-261ENST00000637686 RGS3P49796 1198 aa11.96□□□□□ -0.49
CLN3-261ENST00000637686 ZNF157P51786 506 aaPredicted RBP11.96□□□□□ -0.49
CLN3-261ENST00000637686 PICALMQ13492 652 aa11.96□□□□□ -0.49
CLN3-261ENST00000637686 IDI2Q9BXS1 227 aa11.96□□□□□ -0.49
CLN3-261ENST00000637686 DDX4Q9NQI0 724 aaKnown RBP11.96□□□□□ -0.49
CLN3-261ENST00000637686 PAG1Q9NWQ8 432 aa11.96□□□□□ -0.49
CLN3-261ENST00000637686 MAST2Q6P0Q8 1798 aa11.95□□□□□ -0.5
CLN3-261ENST00000637686 ENTPD3O75355 529 aa11.95□□□□□ -0.5
CLN3-261ENST00000637686 BAG3O95817 575 aa11.95□□□□□ -0.5
CLN3-261ENST00000637686 PPP4CP60510 307 aa11.95□□□□□ -0.5
CLN3-261ENST00000637686 MAP3K11Q16584 847 aa11.95□□□□□ -0.5
CLN3-261ENST00000637686 LDLRAD1Q5T700 205 aa11.95□□□□□ -0.5
CLN3-261ENST00000637686 SLC9C2Q5TAH2 1124 aa11.95□□□□□ -0.5
CLN3-261ENST00000637686 MIGA1Q8NAN2 632 aa11.95□□□□□ -0.5
CLN3-261ENST00000637686 SH3RF3Q8TEJ3 882 aaPredicted RBP11.95□□□□□ -0.5
CLN3-261ENST00000637686 CCDC102AQ96A19 550 aa11.95□□□□□ -0.5
CLN3-261ENST00000637686 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.95□□□□□ -0.5
CLN3-261ENST00000637686 RFX7Q2KHR2 1363 aa11.94□□□□□ -0.5
CLN3-261ENST00000637686 RPAP1Q9BWH6 1393 aaPredicted RBP11.94□□□□□ -0.5
CLN3-261ENST00000637686 FAM155AB1AL88 458 aaPredicted RBP11.94□□□□□ -0.5
CLN3-261ENST00000637686 MAP4K4O95819 1239 aaPredicted RBP11.94□□□□□ -0.5
CLN3-261ENST00000637686 PDE6AP16499 860 aa11.94□□□□□ -0.5
CLN3-261ENST00000637686 PLCG2P16885 1265 aa11.94□□□□□ -0.5
CLN3-261ENST00000637686 MX1P20591 662 aa11.94□□□□□ -0.5
CLN3-261ENST00000637686 IREB2P48200 963 aaKnown RBP11.94□□□□□ -0.5
CLN3-261ENST00000637686 DYNLL1P63167 89 aaKnown RBP11.94□□□□□ -0.5
CLN3-261ENST00000637686 MIGA2Q7L4E1 593 aa11.94□□□□□ -0.5
CLN3-261ENST00000637686 RASAL3Q86YV0 1011 aa11.94□□□□□ -0.5
CLN3-261ENST00000637686 ZSCAN29Q8IWY8 852 aaPredicted RBP11.94□□□□□ -0.5
CLN3-261ENST00000637686 TEX11Q8IYF3 940 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms