RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 CCER2I3L3R5 266 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 BIN1O00499 593 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 FOXO3O43524 673 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 CFPP27918 469 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 SCNN1AP37088 669 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 PAOXQ6QHF9 649 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 CLEC4GQ6UXB4 293 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 DNAJC14Q6Y2X3 702 aaPredicted RBP3.94□□□□□ -1.78
VIM-210ENST00000637053 ATG4DQ86TL0 474 aaPredicted RBP3.94□□□□□ -1.78
VIM-210ENST00000637053 NOP9Q86U38 636 aaKnown RBP3.94□□□□□ -1.78
VIM-210ENST00000637053 SMG8Q8ND04 991 aaKnown RBP3.94□□□□□ -1.78
VIM-210ENST00000637053 SLC7A3Q8WY07 619 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 PMM1Q92871 262 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 KRTAP9-8Q9BYQ0 159 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 MAF1Q9H063 256 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 SUGCTQ9HAC7 445 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 LRRC4CQ9HCJ2 640 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 OSGEPQ9NPF4 335 aa3.94□□□□□ -1.78
VIM-210ENST00000637053 TMA7Q9Y2S6 64 aaKnown RBP3.94□□□□□ -1.78
VIM-210ENST00000637053 hCG_2014768A0A024R1R8 64 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 NFKBIEO00221 500 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 EXOC5O00471 708 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 ACPPP15309 386 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 PAX3P23760 479 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 IGBP1P78318 339 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 BNIP3Q12983 259 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 WDR78Q5VTH9 848 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 NUTM2GQ5VZR2 741 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 ZNF765Q7L2R6 523 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 SDR16C5Q8N3Y7 309 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 C2CD4AQ8NCU7 369 aaPredicted RBP3.93□□□□□ -1.78
VIM-210ENST00000637053 TMEM40Q8WWA1 233 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 CALR3Q96L12 384 aaKnown RBP3.93□□□□□ -1.78
VIM-210ENST00000637053 BCL2L13Q9BXK5 485 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 VRTNQ9H8Y1 702 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.93□□□□□ -1.78
VIM-210ENST00000637053 ADAMTS6Q9UKP5 1117 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 GNEQ9Y223 722 aaKnown RBP3.93□□□□□ -1.78
VIM-210ENST00000637053 SLC5A6Q9Y289 635 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 FAN1Q9Y2M0 1017 aa3.93□□□□□ -1.78
VIM-210ENST00000637053 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.92□□□□□ -1.78
VIM-210ENST00000637053 LOC100289279A0A1B0GTE1 492 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 CLGNO14967 610 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 U2SURPO15042 1029 aaKnown RBP3.92□□□□□ -1.78
VIM-210ENST00000637053 RNASE1P07998 156 aaKnown RBP3.92□□□□□ -1.78
VIM-210ENST00000637053 LIG1P18858 919 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 PTPROQ16827 1216 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 HSP90AB2PQ58FF8 381 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 ANKMY2Q8IV38 441 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 EZH1Q92800 747 aaPredicted RBP3.92□□□□□ -1.78
VIM-210ENST00000637053 KCNB2Q92953 911 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 HHIPQ96QV1 700 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 SAP130Q9H0E3 1048 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 MBNL3Q9NUK0 354 aaKnown RBP3.92□□□□□ -1.78
VIM-210ENST00000637053 CHPF2Q9P2E5 772 aa3.92□□□□□ -1.78
VIM-210ENST00000637053 TFIP11Q9UBB9 837 aaKnown RBP3.92□□□□□ -1.78
VIM-210ENST00000637053 MAFBQ9Y5Q3 323 aaPredicted RBP3.92□□□□□ -1.78
VIM-210ENST00000637053 SOX1O00570 391 aaPredicted RBP3.91□□□□□ -1.78
VIM-210ENST00000637053 ANP32CO43423 234 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 TRPA1O75762 1119 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 VAMP1P23763 118 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 CALRP27797 417 aaKnown RBP3.91□□□□□ -1.78
VIM-210ENST00000637053 USP11P51784 963 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 C19orf57Q0VDD7 668 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 C4orf46Q504U0 113 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 NOM1Q5C9Z4 860 aaKnown RBP3.91□□□□□ -1.78
VIM-210ENST00000637053 KANK4Q5T7N3 995 aaPredicted RBP3.91□□□□□ -1.78
VIM-210ENST00000637053 EGFLAMQ63HQ2 1017 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 LARP1Q6PKG0 1096 aaKnown RBP3.91□□□□□ -1.78
VIM-210ENST00000637053 GIPC2Q8TF65 315 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 GLMNQ92990 594 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 ZNF622Q969S3 477 aaKnown RBP eCLIP3.91□□□□□ -1.78
VIM-210ENST00000637053 FAM84AQ96KN4 292 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 SLC38A3Q99624 504 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 CHMP4BQ9H444 224 aaKnown RBP3.91□□□□□ -1.78
VIM-210ENST00000637053 RC3H2Q9HBD1 1191 aaKnown RBP3.91□□□□□ -1.78
VIM-210ENST00000637053 SOX13Q9UN79 622 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 JAG2Q9Y219 1238 aa3.91□□□□□ -1.78
VIM-210ENST00000637053 TLDC2A0PJX2 215 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 FUT4P22083 530 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 CABP4P57796 275 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 SRPK2P78362 688 aaKnown RBP3.9□□□□□ -1.79
VIM-210ENST00000637053 FKBP5Q13451 457 aaPredicted RBP3.9□□□□□ -1.79
VIM-210ENST00000637053 TTC39BQ5VTQ0 682 aaPredicted RBP3.9□□□□□ -1.79
VIM-210ENST00000637053 DUSP27Q5VZP5 1158 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 SDE2Q6IQ49 451 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 TTLL10Q6ZVT0 673 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 NCAPG2Q86XI2 1143 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 LRRN4CLQ8ND94 238 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 USP26Q9BXU7 913 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 LNPKQ9C0E8 428 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 CYP4F12Q9HCS2 524 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 JADE2Q9NQC1 790 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 ABI2Q9NYB9 513 aaPredicted RBP3.9□□□□□ -1.79
VIM-210ENST00000637053 KANSL3Q9P2N6 904 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 GABBR1Q9UBS5 961 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 COMMD10Q9Y6G5 202 aa3.9□□□□□ -1.79
VIM-210ENST00000637053 TTC36A6NLP5 189 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L15C9J2P7 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L10C9JJH3 530 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms