RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 ZSWIM5Q9P217 1185 aa18.34■□□□□ 0.53
CLN3-251ENST00000636853 MAGEB6P1A0A0J9YX57 407 aa18.33■□□□□ 0.53
CLN3-251ENST00000636853 DHX16O60231 1041 aaKnown RBP18.33■□□□□ 0.53
CLN3-251ENST00000636853 AKNAD1Q5T1N1 836 aa18.33■□□□□ 0.53
CLN3-251ENST00000636853 CNBD1Q8NA66 436 aa18.33■□□□□ 0.53
CLN3-251ENST00000636853 IGDCC4Q8TDY8 1250 aa18.33■□□□□ 0.53
CLN3-251ENST00000636853 CACNA1SQ13698 1873 aa18.33■□□□□ 0.53
CLN3-251ENST00000636853 CPLX1O14810 134 aa18.33■□□□□ 0.52
CLN3-251ENST00000636853 KDM4AO75164 1064 aa18.33■□□□□ 0.52
CLN3-251ENST00000636853 TRIM37O94972 964 aa18.33■□□□□ 0.52
CLN3-251ENST00000636853 HIBADHP31937 336 aaKnown RBP18.33■□□□□ 0.52
CLN3-251ENST00000636853 RRP12Q5JTH9 1297 aaKnown RBP18.33■□□□□ 0.52
CLN3-251ENST00000636853 ZNF384Q8TF68 577 aa18.33■□□□□ 0.52
CLN3-251ENST00000636853 ANP32BQ92688 251 aaKnown RBP18.33■□□□□ 0.52
CLN3-251ENST00000636853 CEBPZQ03701 1054 aaKnown RBP18.32■□□□□ 0.52
CLN3-251ENST00000636853 OTUD7BQ6GQQ9 843 aa18.32■□□□□ 0.52
CLN3-251ENST00000636853 MFSD6Q6ZSS7 791 aa18.32■□□□□ 0.52
CLN3-251ENST00000636853 TXNRD3Q86VQ6 643 aa18.32■□□□□ 0.52
CLN3-251ENST00000636853 TMEM87BQ96K49 555 aa18.32■□□□□ 0.52
CLN3-251ENST00000636853 ORC3Q9UBD5 711 aaPredicted RBP18.32■□□□□ 0.52
CLN3-251ENST00000636853 UBR3Q6ZT12 1888 aa18.32■□□□□ 0.52
CLN3-251ENST00000636853 LIG1P18858 919 aa18.32■□□□□ 0.52
CLN3-251ENST00000636853 DYNLL1P63167 89 aaKnown RBP18.32■□□□□ 0.52
CLN3-251ENST00000636853 TMEM67Q5HYA8 995 aa18.32■□□□□ 0.52
CLN3-251ENST00000636853 LY9Q9HBG7 655 aa18.32■□□□□ 0.52
CLN3-251ENST00000636853 TOMM22Q9NS69 142 aa18.32■□□□□ 0.52
CLN3-251ENST00000636853 MYH13Q9UKX3 1938 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 GOLGA6L4A6NEF3 574 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 ADRA2BP18089 450 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 ADD1P35611 737 aaKnown RBP18.31■□□□□ 0.52
CLN3-251ENST00000636853 CCDC173Q0VFZ6 552 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 CHAF1AQ13111 956 aaPredicted RBP18.31■□□□□ 0.52
CLN3-251ENST00000636853 GIMAP6Q6P9H5 292 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 APOA5Q6Q788 366 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 NFXL1Q6ZNB6 911 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 CCDC144CPQ8IYA2 1237 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 RIOK1Q9BRS2 568 aaKnown RBP18.31■□□□□ 0.52
CLN3-251ENST00000636853 FTOQ9C0B1 505 aaKnown RBP eCLIP18.31■□□□□ 0.52
CLN3-251ENST00000636853 BRWD3Q6RI45 1802 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 MYH15Q9Y2K3 1946 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 TIAM2Q8IVF5 1701 aa18.31■□□□□ 0.52
CLN3-251ENST00000636853 METAP2P50579 478 aaKnown RBP eCLIP18.3■□□□□ 0.52
CLN3-251ENST00000636853 GLIPR1L2Q4G1C9 344 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 PRR5LQ6MZQ0 368 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 KRT27Q7Z3Y8 459 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 MICU3Q86XE3 530 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 PGBD1Q96JS3 809 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 CNNM2Q9H8M5 875 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 GJB4Q9NTQ9 266 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 JAG2Q9Y219 1238 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 MINDY4BA8MYZ0 360 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 SMIM22K7EJ46 135 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 IFIT3O14879 490 aaKnown RBP18.3■□□□□ 0.52
CLN3-251ENST00000636853 SEMA3EO15041 775 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 LETM1O95202 739 aaPredicted RBP18.3■□□□□ 0.52
CLN3-251ENST00000636853 GYS1P13807 737 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 STAG1Q8WVM7 1258 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 PPP1R9BQ96SB3 815 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 ZKSCAN3Q9BRR0 538 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 MYL10Q9BUA6 226 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 KRT23Q9C075 422 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 CFAP45Q9UL16 551 aa18.3■□□□□ 0.52
CLN3-251ENST00000636853 PPARAQ07869 468 aa18.29■□□□□ 0.52
CLN3-251ENST00000636853 GRAPQ13588 217 aa18.29■□□□□ 0.52
CLN3-251ENST00000636853 ILDR1Q86SU0 546 aaPredicted RBP18.29■□□□□ 0.52
CLN3-251ENST00000636853 GRAPLQ8TC17 118 aaPredicted RBP18.29■□□□□ 0.52
CLN3-251ENST00000636853 C8orf76Q96K31 380 aa18.29■□□□□ 0.52
CLN3-251ENST00000636853 ANKIB1Q9P2G1 1089 aa18.29■□□□□ 0.52
CLN3-251ENST00000636853 CDC27P30260 824 aa18.29■□□□□ 0.52
CLN3-251ENST00000636853 AEBP2Q6ZN18 517 aaPredicted RBP18.29■□□□□ 0.52
CLN3-251ENST00000636853 ZBTB43O43298 467 aa18.28■□□□□ 0.52
CLN3-251ENST00000636853 MECOMQ03112 1051 aa18.28■□□□□ 0.52
CLN3-251ENST00000636853 NSUN4Q96CB9 384 aaKnown RBP18.28■□□□□ 0.52
CLN3-251ENST00000636853 BAZ2AQ9UIF9 1905 aaKnown RBP18.28■□□□□ 0.52
CLN3-251ENST00000636853 PRDX5P30044 214 aa18.28■□□□□ 0.52
CLN3-251ENST00000636853 SLC27A3Q5K4L6 730 aa18.28■□□□□ 0.52
CLN3-251ENST00000636853 SGMS1Q86VZ5 419 aa18.28■□□□□ 0.52
CLN3-251ENST00000636853 TRIM44Q96DX7 344 aaPredicted RBP18.28■□□□□ 0.52
CLN3-251ENST00000636853 USP28Q96RU2 1077 aa18.28■□□□□ 0.52
CLN3-251ENST00000636853 TAOK2Q9UL54 1235 aa18.28■□□□□ 0.52
CLN3-251ENST00000636853 IRS2Q9Y4H2 1338 aa18.27■□□□□ 0.52
CLN3-251ENST00000636853 FBXO18Q8NFZ0 1043 aa18.27■□□□□ 0.52
CLN3-251ENST00000636853 BICD2Q8TD16 824 aa18.27■□□□□ 0.52
CLN3-251ENST00000636853 AIFM3Q96NN9 605 aa18.27■□□□□ 0.52
CLN3-251ENST00000636853 DACT1Q9NYF0 836 aa18.27■□□□□ 0.52
CLN3-251ENST00000636853 CYP2D7A0A087X1C5 515 aa18.26■□□□□ 0.51
CLN3-251ENST00000636853 SERPINB2P05120 415 aa18.26■□□□□ 0.51
CLN3-251ENST00000636853 LIFRP42702 1097 aa18.26■□□□□ 0.51
CLN3-251ENST00000636853 CAMK4Q16566 473 aa18.26■□□□□ 0.51
CLN3-251ENST00000636853 PHKBQ93100 1093 aa18.26■□□□□ 0.51
CLN3-251ENST00000636853 SLC12A7Q9Y666 1083 aa18.26■□□□□ 0.51
CLN3-251ENST00000636853 CCDC69A6NI79 296 aa18.26■□□□□ 0.51
CLN3-251ENST00000636853 GOLGA8AA7E2F4 631 aa18.26■□□□□ 0.51
CLN3-251ENST00000636853 RPGRQ92834 1020 aaKnown RBP18.26■□□□□ 0.51
CLN3-251ENST00000636853 GPR101Q96P66 508 aaPredicted RBP18.26■□□□□ 0.51
CLN3-251ENST00000636853 RNF41Q9H4P4 317 aaPredicted RBP18.26■□□□□ 0.51
CLN3-251ENST00000636853 FAM217BQ9NTX9 383 aaPredicted RBP18.26■□□□□ 0.51
CLN3-251ENST00000636853 PDS5AQ29RF7 1337 aaKnown RBP18.26■□□□□ 0.51
CLN3-251ENST00000636853 RRP9O43818 475 aaKnown RBP18.25■□□□□ 0.51
CLN3-251ENST00000636853 ZNF396Q96N95 335 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms