RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 EPB41L4AQ9HCS5 686 aaPredicted RBP12.53□□□□□ -0.4
CLN3-248ENST00000636355 ATP8A2Q9NTI2 1148 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 PPP1R1BQ9UD71 204 aaPredicted RBP12.53□□□□□ -0.4
CLN3-248ENST00000636355 ANAPC4Q9UJX5 808 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.53□□□□□ -0.4
CLN3-248ENST00000636355 SLC4A4Q9Y6R1 1079 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 MROH7-TTC4A0A0A0MT08 1334 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 GAKO14976 1311 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 ROBO3Q96MS0 1386 aa12.53□□□□□ -0.4
CLN3-248ENST00000636355 BAG3O95817 575 aa12.52□□□□□ -0.41
CLN3-248ENST00000636355 MCM5P33992 734 aa12.52□□□□□ -0.41
CLN3-248ENST00000636355 TDO2P48775 406 aa12.52□□□□□ -0.41
CLN3-248ENST00000636355 PPP4CP60510 307 aa12.52□□□□□ -0.41
CLN3-248ENST00000636355 STOX1Q6ZVD7 989 aa12.52□□□□□ -0.41
CLN3-248ENST00000636355 MB21D2Q8IYB1 491 aaPredicted RBP12.52□□□□□ -0.41
CLN3-248ENST00000636355 TTLL6Q8N841 843 aa12.52□□□□□ -0.41
CLN3-248ENST00000636355 ZNF384Q8TF68 577 aa12.52□□□□□ -0.41
CLN3-248ENST00000636355 STAG1Q8WVM7 1258 aa12.52□□□□□ -0.41
CLN3-248ENST00000636355 ARPP21Q9UBL0 812 aaPredicted RBP12.52□□□□□ -0.41
CLN3-248ENST00000636355 MYH1P12882 1939 aa12.51□□□□□ -0.41
CLN3-248ENST00000636355 APPP05067 770 aa12.51□□□□□ -0.41
CLN3-248ENST00000636355 EVCP57679 992 aa12.51□□□□□ -0.41
CLN3-248ENST00000636355 EXOSC10Q01780 885 aaKnown RBP12.51□□□□□ -0.41
CLN3-248ENST00000636355 KIAA2012Q0VF49 1180 aa12.51□□□□□ -0.41
CLN3-248ENST00000636355 MFSD14BQ5SR56 506 aa12.51□□□□□ -0.41
CLN3-248ENST00000636355 ADGRA1Q86SQ6 560 aa12.51□□□□□ -0.41
CLN3-248ENST00000636355 KRT23Q9C075 422 aa12.51□□□□□ -0.41
CLN3-248ENST00000636355 TAF6LQ9Y6J9 622 aa12.51□□□□□ -0.41
CLN3-248ENST00000636355 CHRNA5P30532 468 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 RCAN1P53805 252 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 TOB2Q14106 344 aaPredicted RBP12.5□□□□□ -0.41
CLN3-248ENST00000636355 RAB3GAP1Q15042 981 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 SBK1Q52WX2 424 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 STRIP1Q5VSL9 837 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 CLEC17AQ6ZS10 378 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 MIGA1Q8NAN2 632 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 PDGFDQ9GZP0 370 aaPredicted RBP12.5□□□□□ -0.41
CLN3-248ENST00000636355 NBPF3Q9H094 633 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 TAOK2Q9UL54 1235 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 CD2APQ9Y5K6 639 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 MYH8P13535 1937 aa12.5□□□□□ -0.41
CLN3-248ENST00000636355 NID2Q14112 1375 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 MYO3BQ8WXR4 1341 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 HDLBPQ00341 1268 aaKnown RBP12.49□□□□□ -0.41
CLN3-248ENST00000636355 AKNAD1Q5T1N1 836 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 TTLL5Q6EMB2 1281 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 SLC51AQ86UW1 340 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 TBC1D10CQ8IV04 446 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 AMOTL1Q8IY63 956 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 TMEM87BQ96K49 555 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 SGIP1Q9BQI5 828 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 MRIQ9BWK5 157 aa12.49□□□□□ -0.41
CLN3-248ENST00000636355 COL2A1P02458 1487 aaPredicted RBP12.48□□□□□ -0.41
CLN3-248ENST00000636355 GPR75-ASB3A0A0A6YYF3 556 aa12.48□□□□□ -0.41
CLN3-248ENST00000636355 G3V3G9 751 aa12.48□□□□□ -0.41
CLN3-248ENST00000636355 SLC3A2P08195 630 aaKnown RBP12.48□□□□□ -0.41
CLN3-248ENST00000636355 FGRP09769 529 aa12.48□□□□□ -0.41
CLN3-248ENST00000636355 PTMSP20962 102 aa12.48□□□□□ -0.41
CLN3-248ENST00000636355 FGD1P98174 961 aa12.48□□□□□ -0.41
CLN3-248ENST00000636355 PPARAQ07869 468 aa12.48□□□□□ -0.41
CLN3-248ENST00000636355 SART3Q15020 963 aaKnown RBP12.48□□□□□ -0.41
CLN3-248ENST00000636355 DCAF8Q5TAQ9 597 aa12.48□□□□□ -0.41
CLN3-248ENST00000636355 GTF3C6Q969F1 213 aa12.48□□□□□ -0.41
CLN3-248ENST00000636355 ZNF274Q96GC6 653 aaPredicted RBP12.48□□□□□ -0.41
CLN3-248ENST00000636355 GPR101Q96P66 508 aaPredicted RBP12.48□□□□□ -0.41
CLN3-248ENST00000636355 LLPHQ9BRT6 129 aaKnown RBP12.48□□□□□ -0.41
CLN3-248ENST00000636355 LTBP3Q9NS15 1303 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 ORC4O43929 436 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 CPA1P15085 419 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 PDCP20941 246 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 KCNA3P22001 575 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 HAND2P61296 217 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 HHIPL2Q6UWX4 724 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 MFSD6Q6ZSS7 791 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 Q6ZUG5 572 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 RGS22Q8NE09 1264 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 GBP4Q96PP9 640 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 DCP1AQ9NPI6 582 aaPredicted RBP12.47□□□□□ -0.41
CLN3-248ENST00000636355 AATFQ9NY61 560 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLN3-248ENST00000636355 PIM2Q9P1W9 311 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 MKRN1Q9UHC7 482 aaKnown RBP12.47□□□□□ -0.41
CLN3-248ENST00000636355 TPCN1Q9ULQ1 816 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 ANGEL1Q9UNK9 670 aaKnown RBP12.47□□□□□ -0.41
CLN3-248ENST00000636355 KIF3AQ9Y496 699 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 ADAMTSL1Q8N6G6 1762 aa12.47□□□□□ -0.41
CLN3-248ENST00000636355 NEDD4P46934 1319 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 PRC1O43663 620 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 DHX16O60231 1041 aaKnown RBP12.46□□□□□ -0.41
CLN3-248ENST00000636355 ECE2O60344 883 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 PFKFB2O60825 505 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 DPEP1P16444 411 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 LIFRP42702 1097 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 MMP14P50281 582 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 GTF2IP78347 998 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 ME3Q16798 604 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 SGMS1Q86VZ5 419 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 ZNF784Q8NCA9 323 aaPredicted RBP12.46□□□□□ -0.41
CLN3-248ENST00000636355 SDR42E1Q8WUS8 393 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 ESR2Q92731 530 aa12.46□□□□□ -0.41
CLN3-248ENST00000636355 BRF1Q92994 677 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms