RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 HP1BP3Q5SSJ5 553 aaPredicted RBP2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 ANGEL2Q5VTE6 544 aaKnown RBP2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 SEZ6L2Q6UXD5 910 aa2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 SYDE1Q6ZW31 735 aaPredicted RBP2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 ANKLE2Q86XL3 938 aa2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 PMEPA1Q969W9 287 aa2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 HRASLS5Q96KN8 279 aa2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 CORO1BQ9BR76 489 aa2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 BHLHE41Q9C0J9 482 aaPredicted RBP2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 CRIM1Q9NZV1 1036 aa2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 FOXD3Q9UJU5 478 aaPredicted RBP2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 PPP1R9AQ9ULJ8 1098 aa2.49□□□□□ -2.01
SMARCB1-209ENST00000635578 TNFRSF21O75509 655 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 LEFTY1O75610 366 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 TSPAN15O95858 294 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 INHBBP09529 407 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 PRKCQQ04759 706 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 IKZF1Q13422 519 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 AAMPQ13685 434 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 IFI16Q16666 785 aaKnown RBP2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 ZNF423Q2M1K9 1284 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 SPRED3Q2MJR0 410 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 PEAR1Q5VY43 1037 aaPredicted RBP2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 SLC23A3Q6PIS1 610 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 MPZL3Q6UWV2 235 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 XKR5Q6UX68 686 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 PRR23BQ6ZRT6 265 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 FLAD1Q8NFF5 587 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 BHLHE22Q8NFJ8 381 aaPredicted RBP2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 SNX29Q8TEQ0 813 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 PPP1R16BQ96T49 567 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 TRIM56Q9BRZ2 755 aaKnown RBP2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 KRTAP9-3Q9BYQ3 159 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 CLEC4MQ9H2X3 399 aaPredicted RBP2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 PIDD1Q9HB75 910 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 FAM53CQ9NYF3 392 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 VAV3Q9UKW4 847 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 POLIQ9UNA4 740 aa2.48□□□□□ -2.01
SMARCB1-209ENST00000635578 TMEM265A0A087WTH1 108 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 A0A096LPE4 126 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 A0A1W2PPZ6 126 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 IQCJ-SCHIP1C9J366 451 aaPredicted RBP2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 NPIPB6E9PJ23 425 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 EIF4EBP3O60516 100 aaPredicted RBP2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 AOC2O75106 756 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 CEACAM5P06731 702 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 C1QTNF9P0C862 333 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 MPSTP25325 297 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 MZF1P28698 734 aaPredicted RBP2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 GRIA4P48058 902 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 ZP2Q05996 745 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 MTMR3Q13615 1198 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 NOM1Q5C9Z4 860 aaKnown RBP2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 TMEM164Q5U3C3 297 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 FYB2Q5VWT5 728 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 TTLL10Q6ZVT0 673 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 WDR18Q9BV38 432 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 ZC3H12CQ9C0D7 883 aaKnown RBP2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 ZNF777Q9ULD5 760 aaPredicted RBP2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 PLAGL2Q9UPG8 496 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 AMOTL2Q9Y2J4 779 aa2.47□□□□□ -2.01
SMARCB1-209ENST00000635578 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 NFIBO00712 420 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 RNGTTO60942 597 aaKnown RBP2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 HCLS1P14317 486 aaPredicted RBP2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 LIG1P18858 919 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 ATP2B4P23634 1241 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 EIF1AXP47813 144 aaKnown RBP2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 OXCT1P55809 520 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 CTSWP56202 376 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 SIAH1Q8IUQ4 282 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 SMYD4Q8IYR2 804 aaPredicted RBP2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 TOP6BLQ8N6T0 577 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 DDX54Q8TDD1 881 aaKnown RBP2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 HELQQ8TDG4 1101 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 WDR89Q96FK6 387 aaPredicted RBP2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 DIRC2Q96SL1 478 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 GSX1Q9H4S2 264 aaPredicted RBP2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 LIN7BQ9HAP6 207 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 KCNK12Q9HB15 430 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 ZFYVE1Q9HBF4 777 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 CTNND2Q9UQB3 1225 aa2.46□□□□□ -2.02
SMARCB1-209ENST00000635578 A0A1W2PP55 124 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 TMPRSS2O15393 492 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 B3GALT4O96024 378 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 AFMP43652 599 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 ID3Q02535 119 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 ELOAQ14241 798 aaKnown RBP2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 KRTAP5-3Q6L8H2 238 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 CCNJLQ8IV13 435 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 KIRREL1Q96J84 757 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 DUSP23Q9BVJ7 150 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 ATXN3LQ9H3M9 355 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 NSUN3Q9H649 340 aaKnown RBP2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 CCDC86Q9H6F5 360 aaKnown RBP2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 SSU72Q9NP77 194 aaKnown RBP2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 SLAIN2Q9P270 581 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 JAG2Q9Y219 1238 aa2.45□□□□□ -2.02
SMARCB1-209ENST00000635578 KRT1P04264 644 aa2.44□□□□□ -2.02
SMARCB1-209ENST00000635578 GLI1P08151 1106 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms