RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 BRAPQ7Z569 592 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 TGFBRAP1Q8WUH2 860 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 ERVV-2B6SEH9 535 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 DBNDD2Q9BQY9 259 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 GTPBP4Q9BZE4 634 aaKnown RBP12.84□□□□□ -0.35
CLIP1-219ENST00000620786 CSADQ9Y600 493 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 VWA3AA6NCI4 1184 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 HOXB7P09629 217 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 ZSCAN23Q3MJ62 389 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.84□□□□□ -0.353e-6■■■■■ 31.2
CLIP1-219ENST00000620786 KRT5P13647 590 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 SLC1A4P43007 532 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 TERF1P54274 439 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 WDR44Q5JSH3 913 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 TRIM6Q9C030 488 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-219ENST00000620786 AZI2Q9H6S1 392 aa12.84□□□□□ -0.35
CLIP1-219ENST00000620786 TMEM2Q9UHN6 1383 aa12.83□□□□□ -0.35
CLIP1-219ENST00000620786 UBXN1Q04323 297 aa12.83□□□□□ -0.35
CLIP1-219ENST00000620786 UVSSAQ2YD98 709 aa12.83□□□□□ -0.35
CLIP1-219ENST00000620786 CFAP43Q8NDM7 1665 aa12.83□□□□□ -0.35
CLIP1-219ENST00000620786 ERICH4A6NGS2 130 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 PRDM1O75626 825 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 STX17P56962 302 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 CTDSPL2Q05D32 466 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 LMBR1Q8WVP7 490 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 A0A1W2PRG0 241 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 M0QZ92 97 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 RPL13P26373 211 aaKnown RBP12.83□□□□□ -0.36
CLIP1-219ENST00000620786 CHMLP26374 656 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 CTR9Q6PD62 1173 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 SUCLG2Q96I99 432 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 DACT1Q9NYF0 836 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 CKAP4Q07065 602 aaKnown RBP12.83□□□□□ -0.36
CLIP1-219ENST00000620786 GCKRQ14397 625 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 NCAPH2Q6IBW4 605 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 PIK3AP1Q6ZUJ8 805 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 TBC1D22AQ8WUA7 517 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 GTF2IP78347 998 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 KIF22Q14807 665 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 CEP135Q66GS9 1140 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-219ENST00000620786 TMEM87BQ96K49 555 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 AS3MTQ9HBK9 375 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 USP40Q9NVE5 1235 aa12.83□□□□□ -0.36
CLIP1-219ENST00000620786 CFAP74Q9C0B2 1584 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 USP19O94966 1318 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 DKC1O60832 514 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLIP1-219ENST00000620786 EPB41P11171 864 aaKnown RBP12.82□□□□□ -0.36
CLIP1-219ENST00000620786 RFX1P22670 979 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 PLCB3Q01970 1234 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 NSMFQ6X4W1 530 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 FNBP4Q8N3X1 1017 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-219ENST00000620786 APPBP2Q92624 585 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 GPAA1O43292 621 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 LPXNO60711 386 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 DEXIO95424 95 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 TESK2Q96S53 571 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 ZSWIM4Q9H7M6 989 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 TRPC5Q9UL62 973 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-219ENST00000620786 RAPGEF1Q13905 1077 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 HAUS3Q68CZ6 603 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 CCDC155Q8N6L0 562 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 IQUBQ8NA54 791 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 PROCA1Q8NCQ7 364 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-219ENST00000620786 ADCY7P51828 1080 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 SLC8A3P57103 927 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 SPOUT1Q5T280 376 aaKnown RBP12.82□□□□□ -0.36
CLIP1-219ENST00000620786 GLT8D2Q9H1C3 349 aa12.82□□□□□ -0.36
CLIP1-219ENST00000620786 CCDC175P0C221 793 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 PLEKHM2Q8IWE5 1019 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 IQCGQ9H095 443 aaKnown RBP12.81□□□□□ -0.36
CLIP1-219ENST00000620786 DNAJC25Q9H1X3 360 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 RNF34Q969K3 372 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 TTF2Q9UNY4 1162 aaKnown RBP12.81□□□□□ -0.36
CLIP1-219ENST00000620786 TACC1O75410 805 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 TNFAIP1Q13829 316 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 CEP112Q8N8E3 955 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 KIFC2Q96AC6 838 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 CEP170Q5SW79 1584 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 DNMT1P26358 1616 aaKnown RBP12.81□□□□□ -0.36
CLIP1-219ENST00000620786 ARHGEF35A5YM69 484 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 PLCD1P51178 756 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 CDAN1Q8IWY9 1227 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 DCPSQ96C86 337 aaKnown RBP12.81□□□□□ -0.36
CLIP1-219ENST00000620786 PAGR1Q9BTK6 254 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 MAK16Q9BXY0 300 aaKnown RBP12.81□□□□□ -0.36
CLIP1-219ENST00000620786 RXRBP28702 533 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 CTSWP56202 376 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 TRPC3Q13507 836 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 ZNF772Q68DY9 489 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-219ENST00000620786 MAEAQ7L5Y9 396 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 EXOC7Q9UPT5 735 aa12.81□□□□□ -0.36
CLIP1-219ENST00000620786 HSF2BPO75031 334 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 TEKT1Q969V4 418 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 ZNF496Q96IT1 587 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-219ENST00000620786 CGNQ9P2M7 1197 aaKnown RBP12.8□□□□□ -0.36
CLIP1-219ENST00000620786 V9GY48 417 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-219ENST00000620786 RPS6KB1P23443 525 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 RNF187Q5TA31 235 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-219ENST00000620786 ZBTB40Q9NUA8 1239 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms