RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TUBB2BQ9BVA1 445 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 RTEL1Q9NZ71 1219 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 TOP1P11387 765 aaKnown RBP12.43□□□□□ -0.42
UPF3A-212ENST00000619079 UBASH3AP57075 661 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 HSP90B2PQ58FF3 399 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 BEND3Q5T5X7 828 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 Q6ZUG5 572 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 PTF1AQ7RTS3 328 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 VSTM4Q8IW00 320 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 EFCAB13Q8IY85 973 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 DNAAF4Q8WXU2 420 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 GBP3Q9H0R5 595 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 SLC52A2Q9HAB3 445 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 PCDHA7Q9UN72 937 aa12.43□□□□□ -0.42
UPF3A-212ENST00000619079 APBA3O96018 575 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 CPP00450 1065 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 SERPINC1P01008 464 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 SCRN1Q12765 414 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 AXDND1Q5T1B0 1012 aaPredicted RBP12.42□□□□□ -0.42
UPF3A-212ENST00000619079 PACS2Q86VP3 889 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 NSUN7Q8NE18 718 aaKnown RBP12.42□□□□□ -0.42
UPF3A-212ENST00000619079 FMNL2Q96PY5 1086 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 FTOQ9C0B1 505 aaKnown RBP eCLIP12.42□□□□□ -0.42
UPF3A-212ENST00000619079 U3KPZ7 1027 aaPredicted RBP12.42□□□□□ -0.42
UPF3A-212ENST00000619079 BCL9O00512 1426 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 STX10O60499 249 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 TAF5LO75529 589 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 YEATS4O95619 227 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 LMOD1P29536 600 aaPredicted RBP12.42□□□□□ -0.42
UPF3A-212ENST00000619079 MYL5Q02045 173 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 COL9A3Q14050 684 aaPredicted RBP12.42□□□□□ -0.42
UPF3A-212ENST00000619079 SF3A1Q15459 793 aaKnown RBP12.42□□□□□ -0.42
UPF3A-212ENST00000619079 CFAP100Q494V2 611 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 CEP112Q8N8E3 955 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 FAM71BQ8TC56 605 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 PIGBQ92521 554 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 EPC1Q9H2F5 836 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 RAB21Q9UL25 225 aa12.42□□□□□ -0.42
UPF3A-212ENST00000619079 PTPDC1A2A3K4 754 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 NDUFA8P51970 172 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 CHMP4BP1P59074 171 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 TAF7Q15545 349 aaPredicted RBP12.41□□□□□ -0.42
UPF3A-212ENST00000619079 CCDC91Q7Z6B0 441 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 PDE11AQ9HCR9 933 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 HOXB7P09629 217 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 BEND6Q5SZJ8 279 aaPredicted RBP12.41□□□□□ -0.42
UPF3A-212ENST00000619079 SWT1Q5T5J6 900 aaKnown RBP12.41□□□□□ -0.42
UPF3A-212ENST00000619079 SRGAP1Q7Z6B7 1085 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 ERCC4Q92889 916 aaPredicted RBP12.41□□□□□ -0.42
UPF3A-212ENST00000619079 KIFC2Q96AC6 838 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 ZBTB9Q96C00 473 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 WDR24Q96S15 920 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 BAG1Q99933 345 aaPredicted RBP12.41□□□□□ -0.42
UPF3A-212ENST00000619079 PHAXQ9H814 394 aaKnown RBP12.41□□□□□ -0.42
UPF3A-212ENST00000619079 MED4Q9NPJ6 270 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 RFX7Q2KHR2 1363 aa12.41□□□□□ -0.42
UPF3A-212ENST00000619079 DOT1LQ8TEK3 1739 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 A0A1B0GVL5 298 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 BTBD11A6QL63 1104 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 STK38Q15208 465 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 TAF6LQ9Y6J9 622 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 CEMIPQ8WUJ3 1361 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 MCM6Q14566 821 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 MMS22LQ6ZRQ5 1243 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 TMEM139Q8IV31 216 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 TTC5Q8N0Z6 440 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 FAM177A1Q8N128 213 aaPredicted RBP12.4□□□□□ -0.42
UPF3A-212ENST00000619079 MSANTD4Q8NCY6 345 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 POLR3EQ9NVU0 708 aa12.4□□□□□ -0.42
UPF3A-212ENST00000619079 LOC102724159A0A0B4J2E5 919 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 SLC39A6Q13433 755 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 PWP2Q15269 919 aaKnown RBP12.39□□□□□ -0.43
UPF3A-212ENST00000619079 LINC00301Q8NCQ3 95 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 DHX58Q96C10 678 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 ASAP1Q9ULH1 1129 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 NEDD4P46934 1319 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 PPFIA4O75335 1185 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 BAG6P46379 1132 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 MCTP2Q6DN12 878 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 CCDC12Q8WUD4 166 aaPredicted RBP12.39□□□□□ -0.43
UPF3A-212ENST00000619079 DRC1Q96MC2 740 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 CEP89Q96ST8 783 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 L1RE1Q9UN81 338 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 SALL1Q9NSC2 1324 aa12.39□□□□□ -0.43
UPF3A-212ENST00000619079 PI4KAP2A4QPH2 592 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 CLGNO14967 610 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 CUTAO60888 179 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 PTCD1O75127 700 aaKnown RBP12.38□□□□□ -0.43
UPF3A-212ENST00000619079 ZNF202O95125 648 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 ATP1A3P13637 1013 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 EIF5P55010 431 aaKnown RBP12.38□□□□□ -0.43
UPF3A-212ENST00000619079 G3BP1Q13283 466 aaKnown RBP eCLIP12.38□□□□□ -0.43
UPF3A-212ENST00000619079 ZNF589Q86UQ0 364 aaPredicted RBP12.38□□□□□ -0.43
UPF3A-212ENST00000619079 PI4KAP1Q8N8J0 262 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 UPF1Q92900 1129 aaKnown RBP eCLIP12.38□□□□□ -0.43
UPF3A-212ENST00000619079 TOGARAM1Q9Y4F4 1720 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 A0A087WUV0 522 aaPredicted RBP12.38□□□□□ -0.43
UPF3A-212ENST00000619079 BIN1O00499 593 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 SPTLC2O15270 562 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 DNAJC21Q5F1R6 531 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms