RNA–Protein interactions for RNA: ENST00000615732.1

COL4A1-205, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 5

Gene COL4A1, Length 1,077 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-205ENST00000615732 PTPN18Q99952 460 aa13.14□□□□□ -0.31
COL4A1-205ENST00000615732 ELP3Q9H9T3 547 aa13.14□□□□□ -0.31
COL4A1-205ENST00000615732 UPF2Q9HAU5 1272 aaKnown RBP13.14□□□□□ -0.31
COL4A1-205ENST00000615732 UNCXA6NJT0 531 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 USP2O75604 605 aaPredicted RBP13.13□□□□□ -0.31
COL4A1-205ENST00000615732 CRKP46108 304 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 CACNB3P54284 484 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 VPS37DQ86XT2 251 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 CNKSR2Q8WXI2 1034 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 ERO1AQ96HE7 468 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 TMEM39BQ9GZU3 492 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 BCL11AQ9H165 835 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 PTPN22Q9Y2R2 807 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 RIPOR2Q9Y4F9 1068 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 UTYO14607 1347 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 MROH5Q6ZUA9 1318 aa13.13□□□□□ -0.31
COL4A1-205ENST00000615732 TESPA1A2RU30 521 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-205ENST00000615732 FRAT2O75474 233 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-205ENST00000615732 TNFAIP1Q13829 316 aa13.12□□□□□ -0.31
COL4A1-205ENST00000615732 RABL6Q3YEC7 729 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-205ENST00000615732 ANKRD13AQ8IZ07 590 aa13.12□□□□□ -0.31
COL4A1-205ENST00000615732 OPTNQ96CV9 577 aa13.12□□□□□ -0.31
COL4A1-205ENST00000615732 SERPINA10Q9UK55 444 aa13.12□□□□□ -0.31
COL4A1-205ENST00000615732 PNMA6EA0A0J9YXQ4 647 aa13.11□□□□□ -0.31
COL4A1-205ENST00000615732 VGLL2Q8N8G2 317 aa13.11□□□□□ -0.31
COL4A1-205ENST00000615732 ARMC5Q96C12 935 aa13.11□□□□□ -0.31
COL4A1-205ENST00000615732 DDRGK1Q96HY6 314 aa13.11□□□□□ -0.31
COL4A1-205ENST00000615732 TEPSINQ96N21 525 aa13.11□□□□□ -0.31
COL4A1-205ENST00000615732 EXOC6BQ9Y2D4 811 aa13.11□□□□□ -0.31
COL4A1-205ENST00000615732 SRGAP3O43295 1099 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 SMARCA5O60264 1052 aaPredicted RBP13.1□□□□□ -0.31
COL4A1-205ENST00000615732 BCAMP50895 628 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 SP3Q02447 781 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 VGLL4Q14135 290 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 HSP90AB4PQ58FF6 505 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 BMP2KLQ5H9B9 411 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 HABP4Q5JVS0 413 aaKnown RBP13.1□□□□□ -0.31
COL4A1-205ENST00000615732 OTUD7BQ6GQQ9 843 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 ERICH6Q7L0X2 663 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 FBXO33Q7Z6M2 555 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 SSH3Q8TE77 659 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 LRRCC1Q9C099 1032 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 EFCC1Q9HA90 598 aa13.1□□□□□ -0.31
COL4A1-205ENST00000615732 ZSWIM8A7E2V4 1837 aa13.09□□□□□ -0.31
COL4A1-205ENST00000615732 RAB11FIP3O75154 756 aa13.09□□□□□ -0.31
COL4A1-205ENST00000615732 EN2P19622 333 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-205ENST00000615732 OS9Q13438 667 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-205ENST00000615732 POLA2Q14181 598 aa13.09□□□□□ -0.31
COL4A1-205ENST00000615732 CAVIN4Q5BKX8 364 aa13.09□□□□□ -0.31
COL4A1-205ENST00000615732 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-205ENST00000615732 BRI3BPQ8WY22 251 aa13.09□□□□□ -0.31
COL4A1-205ENST00000615732 MS4A4AQ96JQ5 239 aa13.09□□□□□ -0.31
COL4A1-205ENST00000615732 IPO9Q96P70 1041 aaKnown RBP13.09□□□□□ -0.31
COL4A1-205ENST00000615732 SURF6O75683 361 aaKnown RBP13.08□□□□□ -0.32
COL4A1-205ENST00000615732 PDE8BO95263 885 aa13.08□□□□□ -0.32
COL4A1-205ENST00000615732 PLEKHM2Q8IWE5 1019 aa13.08□□□□□ -0.32
COL4A1-205ENST00000615732 TEKT1Q969V4 418 aa13.08□□□□□ -0.32
COL4A1-205ENST00000615732 OTUD5Q96G74 571 aa13.08□□□□□ -0.32
COL4A1-205ENST00000615732 KIAA0100Q14667 2235 aaKnown RBP13.07□□□□□ -0.32
COL4A1-205ENST00000615732 CCL15-CCL14A0A0B4J2E2 113 aa13.07□□□□□ -0.32
COL4A1-205ENST00000615732 EIF5BO60841 1220 aaKnown RBP13.07□□□□□ -0.32
COL4A1-205ENST00000615732 TNNI2P48788 182 aa13.07□□□□□ -0.32
COL4A1-205ENST00000615732 PUM3Q15397 648 aaKnown RBP13.07□□□□□ -0.32
COL4A1-205ENST00000615732 TAF1CQ15572 869 aaPredicted RBP13.07□□□□□ -0.32
COL4A1-205ENST00000615732 CCL15Q16663 113 aa13.07□□□□□ -0.32
COL4A1-205ENST00000615732 TTC22Q5TAA0 569 aa13.07□□□□□ -0.32
COL4A1-205ENST00000615732 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.07□□□□□ -0.32
COL4A1-205ENST00000615732 TBC1D22AQ8WUA7 517 aa13.07□□□□□ -0.32
COL4A1-205ENST00000615732 ZNF333Q96JL9 665 aa13.07□□□□□ -0.32
COL4A1-205ENST00000615732 SIL1Q9H173 461 aa13.07□□□□□ -0.32
COL4A1-205ENST00000615732 CSADQ9Y600 493 aa13.07□□□□□ -0.32
COL4A1-205ENST00000615732 PTCH2Q9Y6C5 1203 aa13.07□□□□□ -0.32
COL4A1-205ENST00000615732 IFIT1P09914 478 aaKnown RBP13.06□□□□□ -0.32
COL4A1-205ENST00000615732 FGFR2P21802 821 aa13.06□□□□□ -0.32
COL4A1-205ENST00000615732 RFX5P48382 616 aaPredicted RBP13.06□□□□□ -0.32
COL4A1-205ENST00000615732 MTX1Q13505 466 aa13.06□□□□□ -0.32
COL4A1-205ENST00000615732 FAM43AQ8N2R8 423 aa13.06□□□□□ -0.32
COL4A1-205ENST00000615732 WRNIP1Q96S55 665 aa13.06□□□□□ -0.32
COL4A1-205ENST00000615732 TMOD2Q9NZR1 351 aa13.06□□□□□ -0.32
COL4A1-205ENST00000615732 SNCAIPQ9Y6H5 919 aa13.06□□□□□ -0.32
COL4A1-205ENST00000615732 EYA2O00167 538 aa13.05□□□□□ -0.32
COL4A1-205ENST00000615732 CDC45O75419 566 aa13.05□□□□□ -0.32
COL4A1-205ENST00000615732 GTF2A2P52657 109 aa13.05□□□□□ -0.32
COL4A1-205ENST00000615732 MFAP1P55081 439 aaKnown RBP13.05□□□□□ -0.32
COL4A1-205ENST00000615732 MAP3K9P80192 1104 aa13.05□□□□□ -0.32
COL4A1-205ENST00000615732 APOBEC3HQ6NTF7 200 aaKnown RBP13.05□□□□□ -0.32
COL4A1-205ENST00000615732 ERC1Q8IUD2 1116 aa13.05□□□□□ -0.32
COL4A1-205ENST00000615732 KIF1BPQ96EK5 621 aa13.05□□□□□ -0.32
COL4A1-205ENST00000615732 ZFYVE28Q9HCC9 887 aa13.05□□□□□ -0.32
COL4A1-205ENST00000615732 SPDYE5A6NIY4 337 aa13.04□□□□□ -0.32
COL4A1-205ENST00000615732 ECM2O94769 699 aaPredicted RBP13.04□□□□□ -0.32
COL4A1-205ENST00000615732 SLC5A1P13866 664 aa13.04□□□□□ -0.32
COL4A1-205ENST00000615732 DIXDC1Q155Q3 683 aa13.04□□□□□ -0.32
COL4A1-205ENST00000615732 SLC9C1Q4G0N8 1177 aa13.04□□□□□ -0.32
COL4A1-205ENST00000615732 CASC1Q6TDU7 716 aa13.04□□□□□ -0.32
COL4A1-205ENST00000615732 OTUD7AQ8TE49 926 aaPredicted RBP13.04□□□□□ -0.32
COL4A1-205ENST00000615732 ZKSCAN4Q969J2 545 aaPredicted RBP13.04□□□□□ -0.32
COL4A1-205ENST00000615732 ZDHHC15Q96MV8 337 aa13.04□□□□□ -0.32
COL4A1-205ENST00000615732 ARHGAP39Q9C0H5 1083 aa13.04□□□□□ -0.32
COL4A1-205ENST00000615732 DAXXQ9UER7 740 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms