RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 SPDYE6P0CI01 402 aa17.66■□□□□ 0.42
CD48-203ENST00000613788 RBM26Q5T8P6 1007 aaKnown RBP17.66■□□□□ 0.42
CD48-203ENST00000613788 PRMT6Q96LA8 375 aaPredicted RBP17.66■□□□□ 0.42
CD48-203ENST00000613788 RIOK1Q9BRS2 568 aaKnown RBP17.66■□□□□ 0.42
CD48-203ENST00000613788 ESYT1Q9BSJ8 1104 aa17.66■□□□□ 0.42
CD48-203ENST00000613788 M0R2C6 588 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 SGSM2O43147 1006 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 GPAA1O43292 621 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 MBD4O95243 580 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 GNAT2P19087 354 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 DYNLL1P63167 89 aaKnown RBP17.65■□□□□ 0.42
CD48-203ENST00000613788 KIF4BQ2VIQ3 1234 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 TBC1D10BQ4KMP7 808 aaPredicted RBP17.65■□□□□ 0.42
CD48-203ENST00000613788 SAMD7Q7Z3H4 446 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 ARMT1Q9H993 441 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 USP40Q9NVE5 1235 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 MYH7P12883 1935 aa17.65■□□□□ 0.42
CD48-203ENST00000613788 WNT10BO00744 389 aa17.64■□□□□ 0.41
CD48-203ENST00000613788 ZBED3Q96IU2 234 aaPredicted RBP17.64■□□□□ 0.41
CD48-203ENST00000613788 STRBPQ96SI9 672 aaKnown RBP17.64■□□□□ 0.41
CD48-203ENST00000613788 CRNKL1Q9BZJ0 848 aaKnown RBP17.64■□□□□ 0.41
CD48-203ENST00000613788 PCDHAC2Q9Y5I4 1007 aa17.64■□□□□ 0.41
CD48-203ENST00000613788 MYH2Q9UKX2 1941 aa17.64■□□□□ 0.41
CD48-203ENST00000613788 CCDC171Q6TFL3 1326 aa17.64■□□□□ 0.41
CD48-203ENST00000613788 CDC42EP5Q6NZY7 148 aa17.63■□□□□ 0.41
CD48-203ENST00000613788 KIAA1211Q6ZU35 1233 aa17.63■□□□□ 0.41
CD48-203ENST00000613788 USP50Q70EL3 339 aaPredicted RBP17.63■□□□□ 0.41
CD48-203ENST00000613788 LCORLQ8N3X6 602 aa17.63■□□□□ 0.41
CD48-203ENST00000613788 VEGFAP15692 232 aaPredicted RBP17.62■□□□□ 0.41
CD48-203ENST00000613788 EPHX2P34913 555 aa17.62■□□□□ 0.41
CD48-203ENST00000613788 RHBDL3P58872 404 aa17.62■□□□□ 0.41
CD48-203ENST00000613788 CCDC129Q6ZRS4 1044 aa17.62■□□□□ 0.41
CD48-203ENST00000613788 TEX11Q8IYF3 940 aa17.62■□□□□ 0.41
CD48-203ENST00000613788 SH3RF3Q8TEJ3 882 aaPredicted RBP17.62■□□□□ 0.41
CD48-203ENST00000613788 TDRD3Q9H7E2 651 aaKnown RBP17.62■□□□□ 0.41
CD48-203ENST00000613788 TMOD2Q9NZR1 351 aa17.62■□□□□ 0.41
CD48-203ENST00000613788 EGFRP00533 1210 aa17.62■□□□□ 0.41
CD48-203ENST00000613788 NBPF9Q3BBW0 867 aa17.62■□□□□ 0.41
CD48-203ENST00000613788 C8orf34Q49A92 452 aa17.62■□□□□ 0.41
CD48-203ENST00000613788 ZNF589Q86UQ0 364 aaPredicted RBP17.62■□□□□ 0.41
CD48-203ENST00000613788 PNMA8AQ86V59 439 aaPredicted RBP17.62■□□□□ 0.41
CD48-203ENST00000613788 TAF1DQ9H5J8 278 aaPredicted RBP17.62■□□□□ 0.41
CD48-203ENST00000613788 SLC4A4Q9Y6R1 1079 aa17.62■□□□□ 0.41
CD48-203ENST00000613788 POTECB2RU33 542 aa17.61■□□□□ 0.41
CD48-203ENST00000613788 PATL2C9JE40 543 aaKnown RBP17.61■□□□□ 0.41
CD48-203ENST00000613788 REC8O95072 547 aa17.61■□□□□ 0.41
CD48-203ENST00000613788 APPP05067 770 aa17.61■□□□□ 0.41
CD48-203ENST00000613788 USP5P45974 858 aa17.61■□□□□ 0.41
CD48-203ENST00000613788 TRPM4Q8TD43 1214 aa17.61■□□□□ 0.41
CD48-203ENST00000613788 DDRGK1Q96HY6 314 aa17.61■□□□□ 0.41
CD48-203ENST00000613788 IL25Q9H293 177 aa17.61■□□□□ 0.41
CD48-203ENST00000613788 RRAGCQ9HB90 399 aa17.61■□□□□ 0.41
CD48-203ENST00000613788 ZNF70Q9UC06 446 aaPredicted RBP17.61■□□□□ 0.41
CD48-203ENST00000613788 RPAP1Q9BWH6 1393 aaPredicted RBP17.61■□□□□ 0.41
CD48-203ENST00000613788 WDR90Q96KV7 1748 aa17.6■□□□□ 0.41
CD48-203ENST00000613788 SPDYE2Q495Y8 402 aa17.6■□□□□ 0.41
CD48-203ENST00000613788 IDI2Q9BXS1 227 aa17.6■□□□□ 0.41
CD48-203ENST00000613788 NACAP1Q9BZK3 213 aa17.6■□□□□ 0.41
CD48-203ENST00000613788 ATP8A2Q9NTI2 1148 aa17.6■□□□□ 0.41
CD48-203ENST00000613788 CLRN2A0PK11 232 aa17.59■□□□□ 0.41
CD48-203ENST00000613788 HSPD1P10809 573 aaKnown RBP17.59■□□□□ 0.41
CD48-203ENST00000613788 HIRAP54198 1017 aaPredicted RBP17.59■□□□□ 0.41
CD48-203ENST00000613788 FKBP1CQ5VVH2 108 aa17.59■□□□□ 0.41
CD48-203ENST00000613788 GIMAP6Q6P9H5 292 aa17.59■□□□□ 0.41
CD48-203ENST00000613788 TGFBRAP1Q8WUH2 860 aa17.59■□□□□ 0.41
CD48-203ENST00000613788 DSCC1Q9BVC3 393 aa17.59■□□□□ 0.41
CD48-203ENST00000613788 ANO2Q9NQ90 1003 aa17.59■□□□□ 0.41
CD48-203ENST00000613788 GSG1L2A8MUP6 293 aa17.58■□□□□ 0.41
CD48-203ENST00000613788 PRKAB2O43741 272 aa17.58■□□□□ 0.41
CD48-203ENST00000613788 NPM3O75607 178 aaKnown RBP17.58■□□□□ 0.41
CD48-203ENST00000613788 WDHD1O75717 1129 aaPredicted RBP17.58■□□□□ 0.41
CD48-203ENST00000613788 ZNF526Q8TF50 670 aaPredicted RBP17.58■□□□□ 0.41
CD48-203ENST00000613788 ZC3H15Q8WU90 426 aaKnown RBP17.58■□□□□ 0.41
CD48-203ENST00000613788 SDR42E1Q8WUS8 393 aa17.58■□□□□ 0.41
CD48-203ENST00000613788 VEZTQ9HBM0 779 aa17.58■□□□□ 0.41
CD48-203ENST00000613788 SCN4AP35499 1836 aa17.58■□□□□ 0.41
CD48-203ENST00000613788 TNNI2P48788 182 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 TNFAIP1Q13829 316 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 VPS53Q5VIR6 699 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 IFNL3Q8IZI9 196 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 ADAMTSL1Q8N6G6 1762 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 EPB41L2O43491 1005 aaKnown RBP17.57■□□□□ 0.4
CD48-203ENST00000613788 ENTPD3O75355 529 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 CACNB3P54284 484 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 PICALMQ13492 652 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 ALX1Q15699 326 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 EAPPQ56P03 285 aaPredicted RBP17.57■□□□□ 0.4
CD48-203ENST00000613788 ANGEL2Q5VTE6 544 aaKnown RBP17.57■□□□□ 0.4
CD48-203ENST00000613788 APOBEC3FQ8IUX4 373 aaKnown RBP17.57■□□□□ 0.4
CD48-203ENST00000613788 MAPKAPK5Q8IW41 473 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 DCPSQ96C86 337 aaKnown RBP17.57■□□□□ 0.4
CD48-203ENST00000613788 DCP1AQ9NPI6 582 aaPredicted RBP17.57■□□□□ 0.4
CD48-203ENST00000613788 CTNNA3Q9UI47 895 aa17.57■□□□□ 0.4
CD48-203ENST00000613788 TCP10L2B9ZVM9 353 aa17.56■□□□□ 0.4
CD48-203ENST00000613788 TDO2P48775 406 aa17.56■□□□□ 0.4
CD48-203ENST00000613788 PTH1RQ03431 593 aa17.56■□□□□ 0.4
CD48-203ENST00000613788 NFIAQ12857 509 aa17.56■□□□□ 0.4
CD48-203ENST00000613788 FAM83AQ86UY5 434 aa17.56■□□□□ 0.4
CD48-203ENST00000613788 MAP4K1Q92918 833 aa17.56■□□□□ 0.4
CD48-203ENST00000613788 LSG1Q9H089 658 aaKnown RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms