RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TUBB4AP04350 444 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 NOM1Q5C9Z4 860 aaKnown RBP14.4□□□□□ -0.1
LIG1-221ENST00000613670 MFSD6Q6ZSS7 791 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 TXLNBQ8N3L3 684 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 TRIM34Q9BYJ4 488 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 SIGLEC1Q9BZZ2 1709 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 RANBP6O60518 1105 aaKnown RBP14.4□□□□□ -0.1
LIG1-221ENST00000613670 CTDNEP1O95476 244 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 CCT6AP40227 531 aaKnown RBP14.4□□□□□ -0.1
LIG1-221ENST00000613670 LONRF3Q496Y0 759 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 DIS3L2Q8IYB7 885 aaKnown RBP14.4□□□□□ -0.1
LIG1-221ENST00000613670 KCNB2Q92953 911 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 CEP131Q9UPN4 1083 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 hCG_1642624A0A1W2PR95 340 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 TMEM232C9JQI7 657 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 PNMA6AP0CW24 399 aaPredicted RBP14.4□□□□□ -0.1
LIG1-221ENST00000613670 CAPN2P17655 700 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 SMC1AQ14683 1233 aaKnown RBP14.4□□□□□ -0.1
LIG1-221ENST00000613670 RTN1Q16799 776 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 DCAF5Q96JK2 942 aa14.4□□□□□ -0.1
LIG1-221ENST00000613670 MED23Q9ULK4 1368 aa14.4□□□□□ -0.11
LIG1-221ENST00000613670 PLEKHG1Q9ULL1 1385 aa14.4□□□□□ -0.11
LIG1-221ENST00000613670 ANKRD18BA2A2Z9 1011 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 MAP3K12Q12852 859 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 KLHL34Q8N239 644 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 CABP5Q9NP86 173 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 AXIN2Q9Y2T1 843 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 GYS2P54840 703 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 WTAPQ15007 396 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 ZNF609O15014 1411 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 MYO5BQ9ULV0 1848 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 KIF23Q02241 960 aaPredicted RBP14.39□□□□□ -0.11
LIG1-221ENST00000613670 TSGA10IPQ3SY00 556 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 KIAA1328Q86T90 577 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 ARHGEF25Q86VW2 580 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 GRAMD1CQ8IYS0 662 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 POLR3EQ9NVU0 708 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 SERTAD1Q9UHV2 236 aa14.39□□□□□ -0.11
LIG1-221ENST00000613670 BTBD18B2RXH4 712 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 NUTM2AQ8IVF1 878 aaPredicted RBP14.38□□□□□ -0.11
LIG1-221ENST00000613670 IGSF22Q8N9C0 903 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 DPF2Q92785 391 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 PREX1Q8TCU6 1659 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 COBLO75128 1261 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 EIF5P55010 431 aaKnown RBP14.38□□□□□ -0.11
LIG1-221ENST00000613670 SLC39A14Q15043 492 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 PLCD3Q8N3E9 789 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 MIGA1Q8NAN2 632 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 MAGEC2Q9UBF1 373 aaPredicted RBP14.38□□□□□ -0.11
LIG1-221ENST00000613670 MAPK8IP1Q9UQF2 711 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 TSPOAP1O95153 1857 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 AKR1B15C9JRZ8 316 aaPredicted RBP14.38□□□□□ -0.11
LIG1-221ENST00000613670 WDHD1O75717 1129 aaPredicted RBP14.38□□□□□ -0.11
LIG1-221ENST00000613670 PHKG2P15735 406 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 CTDSPL2Q05D32 466 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 SLC4A8Q2Y0W8 1093 aa14.38□□□□□ -0.11
LIG1-221ENST00000613670 PUS7LQ9H0K6 701 aaKnown RBP14.38□□□□□ -0.11
LIG1-221ENST00000613670 CCDC196A0A1B0GTZ2 297 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 CHMP4BP1P59074 171 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 USPL1Q5W0Q7 1092 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 SPECC1LQ69YQ0 1117 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 NYAP1Q6ZVC0 841 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 RUFY1Q96T51 708 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 TXLNAP40222 546 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 POSTNQ15063 836 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 RRAGBQ5VZM2 374 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 OSBPL5Q9H0X9 879 aaPredicted RBP14.37□□□□□ -0.11
LIG1-221ENST00000613670 CTAGE15A4D2H0 777 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 CUTAO60888 179 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 CTAGE8P0CG41 777 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 RBM43Q6ZSC3 357 aaKnown RBP14.37□□□□□ -0.11
LIG1-221ENST00000613670 CTAGE6Q86UF2 777 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 CTAGE4Q8IX94 777 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 RSPH14Q9UHP6 348 aa14.37□□□□□ -0.11
LIG1-221ENST00000613670 SLFN14P0C7P3 912 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 IL17RAQ96F46 866 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 VPS16Q9H269 839 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 ALDH8A1Q9H2A2 487 aaPredicted RBP14.36□□□□□ -0.11
LIG1-221ENST00000613670 ZNHIT6Q9NWK9 470 aaKnown RBP14.36□□□□□ -0.11
LIG1-221ENST00000613670 GUCA1BQ9UMX6 200 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 SH3TC1Q8TE82 1336 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 CTAGE9A4FU28 777 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 EFCAB8A8MWE9 144 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 MAGEB6Q8N7X4 407 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 LRRN4CLQ8ND94 238 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 ENGASEQ8NFI3 743 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 KIF28PB7ZC32 967 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 MBD4O95243 580 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 HNRNPH2P55795 449 aaKnown RBP14.36□□□□□ -0.11
LIG1-221ENST00000613670 CRACR2AQ9BSW2 395 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 TMOD3Q9NYL9 352 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 SLC4A4Q9Y6R1 1079 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 DLG5Q8TDM6 1919 aa14.36□□□□□ -0.11
LIG1-221ENST00000613670 MARCH6O60337 910 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 DNA2P51530 1060 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 TTF1Q15361 905 aaPredicted RBP14.35□□□□□ -0.11
LIG1-221ENST00000613670 NOC3LQ8WTT2 800 aaKnown RBP14.35□□□□□ -0.11
LIG1-221ENST00000613670 CAPZA3Q96KX2 299 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 TRIM75PA6NK02 468 aa14.35□□□□□ -0.11
LIG1-221ENST00000613670 FDPSP14324 419 aaKnown RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 151.4 ms