RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 IL25Q9H293 177 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 PKD2L1Q9P0L9 805 aa12.5□□□□□ -0.41
FAM3A-221ENST00000612856 PDE6BP35913 854 aa12.49□□□□□ -0.41
FAM3A-221ENST00000612856 METAP2P50579 478 aaKnown RBP eCLIP12.49□□□□□ -0.415e-7■■□□□ 13.5
FAM3A-221ENST00000612856 NFIXQ14938 502 aa12.49□□□□□ -0.41
FAM3A-221ENST00000612856 IFIT1BQ5T764 474 aaKnown RBP12.49□□□□□ -0.41
FAM3A-221ENST00000612856 WDR33Q9C0J8 1336 aaKnown RBP12.49□□□□□ -0.41
FAM3A-221ENST00000612856 RNF41Q9H4P4 317 aaPredicted RBP12.49□□□□□ -0.41
FAM3A-221ENST00000612856 GPCPD1Q9NPB8 672 aa12.49□□□□□ -0.41
FAM3A-221ENST00000612856 DBNLQ9UJU6 430 aaKnown RBP12.49□□□□□ -0.41
FAM3A-221ENST00000612856 PIK3C2AO00443 1686 aa12.49□□□□□ -0.41
FAM3A-221ENST00000612856 PRC1O43663 620 aa12.49□□□□□ -0.41
FAM3A-221ENST00000612856 KINO60870 393 aaKnown RBP12.49□□□□□ -0.41
FAM3A-221ENST00000612856 RPS6KA4O75676 772 aa12.49□□□□□ -0.41
FAM3A-221ENST00000612856 IARSP41252 1262 aaKnown RBP12.49□□□□□ -0.41
FAM3A-221ENST00000612856 VPS72Q15906 364 aa12.49□□□□□ -0.41
FAM3A-221ENST00000612856 OTUD7BQ6GQQ9 843 aa12.49□□□□□ -0.41
FAM3A-221ENST00000612856 ADCY9O60503 1353 aa12.49□□□□□ -0.41
FAM3A-221ENST00000612856 IBTKQ9P2D0 1353 aaPredicted RBP12.49□□□□□ -0.41
FAM3A-221ENST00000612856 TPM3P06753 285 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 ALDH1B1P30837 517 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 PTPN14Q15678 1187 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 USP17L12C9JPN9 530 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 USP17L21D6R901 530 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 GPS2Q13227 327 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 DLGAP5Q15398 846 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 FAM173BQ6P4H8 233 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 HEATR3Q7Z4Q2 680 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 HOMER2Q9NSB8 354 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 LIMCH1Q9UPQ0 1083 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 AKAP12Q02952 1782 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 OLFM4Q6UX06 510 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 MNS1Q8NEH6 495 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 BABAM1Q9NWV8 329 aa12.48□□□□□ -0.41
FAM3A-221ENST00000612856 PDE8BO95263 885 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 SPATA32Q96LK8 384 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 THRAP3Q9Y2W1 955 aaKnown RBP12.47□□□□□ -0.41
FAM3A-221ENST00000612856 CHGBP05060 677 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 TPM4P67936 248 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 TTLL11Q8NHH1 800 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 ESR2Q92731 530 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 ZNF277Q9NRM2 450 aaPredicted RBP12.47□□□□□ -0.41
FAM3A-221ENST00000612856 USP40Q9NVE5 1235 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 KIF24Q5T7B8 1368 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 GJB2P29033 226 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 CEP135Q66GS9 1140 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 KLHL10Q6JEL2 608 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 LUZP1Q86V48 1076 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 LINC00116Q8NCU8 138 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 CNKSR2Q8WXI2 1034 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 DENND2AQ9ULE3 1009 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 SAMM50Q9Y512 469 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 ZNF804BA4D1E1 1349 aa12.47□□□□□ -0.41
FAM3A-221ENST00000612856 MCM2P49736 904 aa12.46□□□□□ -0.41
FAM3A-221ENST00000612856 CYP2D7A0A087X1C5 515 aa12.46□□□□□ -0.41
FAM3A-221ENST00000612856 A0A0D9SFI3 127 aa12.46□□□□□ -0.41
FAM3A-221ENST00000612856 FAM196BA6NMK8 535 aa12.46□□□□□ -0.41
FAM3A-221ENST00000612856 ZBTB43O43298 467 aa12.46□□□□□ -0.41
FAM3A-221ENST00000612856 CREB3L3Q68CJ9 461 aa12.46□□□□□ -0.41
FAM3A-221ENST00000612856 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.46□□□□□ -0.41
FAM3A-221ENST00000612856 KNDC1Q76NI1 1749 aa12.46□□□□□ -0.42
FAM3A-221ENST00000612856 KRT85P78386 507 aa12.46□□□□□ -0.42
FAM3A-221ENST00000612856 GSTO1P78417 241 aa12.46□□□□□ -0.42
FAM3A-221ENST00000612856 MIGA2Q7L4E1 593 aa12.46□□□□□ -0.42
FAM3A-221ENST00000612856 GOLGA6L1Q8N7Z2 621 aa12.46□□□□□ -0.42
FAM3A-221ENST00000612856 UBA5Q9GZZ9 404 aa12.46□□□□□ -0.42
FAM3A-221ENST00000612856 TNMDQ9H2S6 317 aa12.46□□□□□ -0.42
FAM3A-221ENST00000612856 BIN1O00499 593 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 DYNLL1P63167 89 aaKnown RBP12.45□□□□□ -0.42
FAM3A-221ENST00000612856 ELF2Q15723 593 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 ST7Q9NRC1 585 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 CLIP2Q9UDT6 1046 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 CCDC194A0A1B0GVG4 234 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 ZFYP08048 801 aaPredicted RBP12.45□□□□□ -0.42
FAM3A-221ENST00000612856 GABPB1Q06547 395 aaPredicted RBP12.45□□□□□ -0.42
FAM3A-221ENST00000612856 FCHSD1Q86WN1 690 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 CEMIPQ8WUJ3 1361 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 PPEF1O14829 653 aaPredicted RBP12.45□□□□□ -0.42
FAM3A-221ENST00000612856 UVSSAQ2YD98 709 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 SPICE1Q8N0Z3 855 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 FLAD1Q8NFF5 587 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 RSPH14Q9UHP6 348 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 PRKAB2O43741 272 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 PTH1RQ03431 593 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 PTPN12Q05209 780 aaKnown RBP12.45□□□□□ -0.42
FAM3A-221ENST00000612856 HSP90AA4PQ58FG1 418 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 CNKSR1Q969H4 720 aa12.45□□□□□ -0.42
FAM3A-221ENST00000612856 CDKL5O76039 1030 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 GTF2A1P52655 376 aaPredicted RBP12.44□□□□□ -0.42
FAM3A-221ENST00000612856 PLIN2Q99541 437 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 H7C1D1 291 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 SASH1O94885 1247 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 RASEFQ8IZ41 740 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 KBTBD3Q8NAB2 608 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 NEK11Q8NG66 645 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 ARGLU1Q9NWB6 273 aaPredicted RBP12.44□□□□□ -0.42
FAM3A-221ENST00000612856 SPATA31A5Q5VU36 1347 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 SPATA31A7Q8IWB4 1347 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 DDIT3P35638 169 aa12.44□□□□□ -0.42
FAM3A-221ENST00000612856 SSRP1Q08945 709 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms