RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	TAOK3	Q9H2K8	898 aa		13.84	□□□□□ -0.19
VRK3-223	ENST00000601341	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.84	□□□□□ -0.19
VRK3-223	ENST00000601341	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.84	□□□□□ -0.19
VRK3-223	ENST00000601341	USP17L3	A6NCW0	530 aa		13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	USP17L4	A6NCW7	530 aa		13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	FOXP2	O15409	715 aa		13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	FGA	P02671	866 aa		13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	FKBP1A	P62942	108 aa	Known RBP	13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	KRT32	Q14532	448 aa		13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	GRIK5	Q16478	980 aa		13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	USP17L1	Q7RTZ2	530 aa		13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	NACAP1	Q9BZK3	213 aa		13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	TM6SF1	Q9BZW5	370 aa		13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	GOLGB1	Q14789	3259 aa	Known RBP	13.83	□□□□□ -0.19
VRK3-223	ENST00000601341	BAG3	O95817	575 aa		13.83	□□□□□ -0.2
VRK3-223	ENST00000601341	CYP21A2	P08686	494 aa		13.83	□□□□□ -0.2
VRK3-223	ENST00000601341	PSMA5	P28066	241 aa		13.83	□□□□□ -0.2
VRK3-223	ENST00000601341	ALX1	Q15699	326 aa		13.83	□□□□□ -0.2
VRK3-223	ENST00000601341	CERS3	Q8IU89	383 aa		13.83	□□□□□ -0.2
VRK3-223	ENST00000601341	NOL10	Q9BSC4	688 aa	Known RBP	13.83	□□□□□ -0.2
VRK3-223	ENST00000601341	SLC4A4	Q9Y6R1	1079 aa		13.83	□□□□□ -0.2
VRK3-223	ENST00000601341	IARS	P41252	1262 aa	Known RBP	13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	DIXDC1	Q155Q3	683 aa		13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	IMMT	Q16891	758 aa	Known RBP	13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	GAS2L3	Q86XJ1	694 aa		13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	CERS5	Q8N5B7	392 aa		13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	ANP32B	Q92688	251 aa	Known RBP	13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	FAM163A	Q96GL9	167 aa	Predicted RBP	13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	TTC14	Q96N46	770 aa		13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	PANK2	Q9BZ23	570 aa		13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	RTN4	Q9NQC3	1192 aa	Known RBP	13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	KCNQ5	Q9NR82	932 aa		13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	MROH7-TTC4	A0A0A0MT08	1334 aa		13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	ZMYM6	O95789	1325 aa		13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	WDR33	Q9C0J8	1336 aa	Known RBP	13.82	□□□□□ -0.2
VRK3-223	ENST00000601341	GSG1L2	A8MUP6	293 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	NFKBIE	O00221	500 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	DYNLL1	P63167	89 aa	Known RBP	13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	CCDC173	Q0VFZ6	552 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	PKP1	Q13835	747 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	DACT2	Q5SW24	774 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	NIM1K	Q8IY84	436 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	IFNL3	Q8IZI9	196 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	PPP1R9B	Q96SB3	815 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	NAPB	Q9H115	298 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	LTBP3	Q9NS15	1303 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	BRCA1	P38398	1863 aa	Known RBP	13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	ZNF213	O14771	459 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	PRKAB2	O43741	272 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	CLCN1	P35523	988 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	PPP4C	P60510	307 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	JDP2	Q8WYK2	163 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	JAKMIP1	Q96N16	626 aa	Known RBP	13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	ZNRF3	Q9ULT6	936 aa		13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	TTF2	Q9UNY4	1162 aa	Known RBP	13.81	□□□□□ -0.2
VRK3-223	ENST00000601341	GPR75-ASB3	A0A0A6YYF3	556 aa		13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	YDJC	A8MPS7	323 aa		13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	CAST	P20810	708 aa	Known RBP	13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	ADCK5	Q3MIX3	580 aa		13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	GIMAP6	Q6P9H5	292 aa		13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	SYT17	Q9BSW7	474 aa		13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	MXD3	Q9BW11	206 aa		13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	UPF3B	Q9BZI7	483 aa	Known RBP	13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	ZSWIM6	Q9HCJ5	1215 aa		13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	CYP46A1	Q9Y6A2	500 aa		13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	GAK	O14976	1311 aa		13.8	□□□□□ -0.2
VRK3-223	ENST00000601341	MAST2	Q6P0Q8	1798 aa		13.79	□□□□□ -0.2
VRK3-223	ENST00000601341		F8W031	263 aa	Predicted RBP	13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	PLCG2	P16885	1265 aa		13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	TDO2	P48775	406 aa		13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	NASP	P49321	788 aa	Predicted RBP	13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	ZSCAN23	Q3MJ62	389 aa		13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	MRI	Q9BWK5	157 aa		13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	LIMCH1	Q9UPQ0	1083 aa		13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	TAF6L	Q9Y6J9	622 aa		13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	CHD4	Q14839	1912 aa		13.79	□□□□□ -0.2
VRK3-223	ENST00000601341	HMGB1	P09429	215 aa	Known RBP	13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	BTD	P43251	543 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	HDLBP	Q00341	1268 aa	Known RBP	13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	HS1BP3	Q53T59	392 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	BLOC1S2	Q6QNY1	142 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	HHIPL2	Q6UWX4	724 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	RUFY3	Q7L099	469 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	TMEM87A	Q8NBN3	555 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	SDR42E1	Q8WUS8	393 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	SYAP1	Q96A49	352 aa	Predicted RBP	13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	NEK1	Q96PY6	1258 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	ATP8A2	Q9NTI2	1148 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	CCDC88A	Q3V6T2	1871 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	MYO3B	Q8WXR4	1341 aa		13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	PRPF40A	O75400	957 aa	Known RBP	13.78	□□□□□ -0.2
VRK3-223	ENST00000601341	HAND2	P61296	217 aa		13.78	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms