RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TCP10L2B9ZVM9 353 aa15.58■□□□□ 0.08
UPF1-208ENST00000600012 FRAT2O75474 233 aaPredicted RBP15.58■□□□□ 0.08
UPF1-208ENST00000600012 LRRC24Q50LG9 513 aa15.58■□□□□ 0.08
UPF1-208ENST00000600012 DCTPP1Q9H773 170 aa15.58■□□□□ 0.08
UPF1-208ENST00000600012 IQSEC3Q9UPP2 1182 aaPredicted RBP15.58■□□□□ 0.08
UPF1-208ENST00000600012 PDE8BO95263 885 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 SP3Q02447 781 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 CHAF1AQ13111 956 aaPredicted RBP15.57■□□□□ 0.08
UPF1-208ENST00000600012 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.57■□□□□ 0.08
UPF1-208ENST00000600012 CDAN1Q8IWY9 1227 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 VGLL2Q8N8G2 317 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 CD99L2Q8TCZ2 262 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 TEKT1Q969V4 418 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 MS4A4AQ96JQ5 239 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 PTPN18Q99952 460 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 TMEM39BQ9GZU3 492 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 PCDH10Q9P2E7 1040 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 EXOC6BQ9Y2D4 811 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 CSADQ9Y600 493 aa15.57■□□□□ 0.08
UPF1-208ENST00000600012 APBB1O00213 710 aa15.56■□□□□ 0.08
UPF1-208ENST00000600012 GTF2A2P52657 109 aa15.56■□□□□ 0.08
UPF1-208ENST00000600012 MAP3K9P80192 1104 aa15.56■□□□□ 0.08
UPF1-208ENST00000600012 VGLL4Q14135 290 aa15.56■□□□□ 0.08
UPF1-208ENST00000600012 GRIK5Q16478 980 aa15.56■□□□□ 0.08
UPF1-208ENST00000600012 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.56■□□□□ 0.08
UPF1-208ENST00000600012 EFCC1Q9HA90 598 aa15.56■□□□□ 0.08
UPF1-208ENST00000600012 TMOD2Q9NZR1 351 aa15.56■□□□□ 0.08
UPF1-208ENST00000600012 PA2G4Q9UQ80 394 aaKnown RBP15.56■□□□□ 0.08
UPF1-208ENST00000600012 PTPN22Q9Y2R2 807 aa15.56■□□□□ 0.08
UPF1-208ENST00000600012 MAST3O60307 1309 aa15.56■□□□□ 0.08
UPF1-208ENST00000600012 NUCB1Q02818 461 aa15.55■□□□□ 0.08
UPF1-208ENST00000600012 ANKRD45Q5TZF3 282 aa15.55■□□□□ 0.08
UPF1-208ENST00000600012 BRI3BPQ8WY22 251 aa15.55■□□□□ 0.08
UPF1-208ENST00000600012 MRIQ9BWK5 157 aa15.55■□□□□ 0.08
UPF1-208ENST00000600012 SUGT1Q9Y2Z0 365 aa15.55■□□□□ 0.08
UPF1-208ENST00000600012 CCL15-CCL14A0A0B4J2E2 113 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 SMARCA5O60264 1052 aaPredicted RBP15.54■□□□□ 0.08
UPF1-208ENST00000600012 SURF6O75683 361 aaKnown RBP15.54■□□□□ 0.08
UPF1-208ENST00000600012 IFIT1P09914 478 aaKnown RBP15.54■□□□□ 0.08
UPF1-208ENST00000600012 RFX5P48382 616 aaPredicted RBP15.54■□□□□ 0.08
UPF1-208ENST00000600012 RGS3P49796 1198 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 BCAMP50895 628 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 ARHGEF6Q15052 776 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 PUM3Q15397 648 aaKnown RBP15.54■□□□□ 0.08
UPF1-208ENST00000600012 TAF1CQ15572 869 aaPredicted RBP15.54■□□□□ 0.08
UPF1-208ENST00000600012 CCL15Q16663 113 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 FKBP1CQ5VVH2 108 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 FAM83AQ86UY5 434 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 KLHDC4Q8TBB5 520 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 CNKSR2Q8WXI2 1034 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 HOOK2Q96ED9 719 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 OTUD5Q96G74 571 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 ZDHHC15Q96MV8 337 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 LNPKQ9C0E8 428 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 ZFYVE28Q9HCC9 887 aa15.54■□□□□ 0.08
UPF1-208ENST00000600012 HTTP42858 3142 aa15.53■□□□□ 0.08
UPF1-208ENST00000600012 RPAP1Q9BWH6 1393 aaPredicted RBP15.53■□□□□ 0.08
UPF1-208ENST00000600012 SPDYE5A6NIY4 337 aa15.53■□□□□ 0.08
UPF1-208ENST00000600012 FGFR2P21802 821 aa15.53■□□□□ 0.08
UPF1-208ENST00000600012 PDE4AP27815 886 aa15.53■□□□□ 0.08
UPF1-208ENST00000600012 CACNB3P54284 484 aa15.53■□□□□ 0.08
UPF1-208ENST00000600012 CHD1LQ86WJ1 897 aa15.53■□□□□ 0.08
UPF1-208ENST00000600012 ARMC5Q96C12 935 aa15.53■□□□□ 0.08
UPF1-208ENST00000600012 BCL11AQ9H165 835 aa15.53■□□□□ 0.08
UPF1-208ENST00000600012 POTEFA5A3E0 1075 aa15.52■□□□□ 0.08
UPF1-208ENST00000600012 WDHD1O75717 1129 aaPredicted RBP15.52■□□□□ 0.08
UPF1-208ENST00000600012 HHIPL2Q6UWX4 724 aa15.52■□□□□ 0.08
UPF1-208ENST00000600012 WRNIP1Q96S55 665 aa15.52■□□□□ 0.08
UPF1-208ENST00000600012 SIL1Q9H173 461 aa15.52■□□□□ 0.08
UPF1-208ENST00000600012 SNCAIPQ9Y6H5 919 aa15.52■□□□□ 0.08
UPF1-208ENST00000600012 AK9Q5TCS8 1911 aa15.52■□□□□ 0.07
UPF1-208ENST00000600012 EYA2O00167 538 aa15.51■□□□□ 0.07
UPF1-208ENST00000600012 CETPP11597 493 aa15.51■□□□□ 0.07
UPF1-208ENST00000600012 SLC5A1P13866 664 aa15.51■□□□□ 0.07
UPF1-208ENST00000600012 OS9Q13438 667 aaPredicted RBP15.51■□□□□ 0.07
UPF1-208ENST00000600012 DCAF15Q66K64 600 aa15.51■□□□□ 0.07
UPF1-208ENST00000600012 APOBEC3HQ6NTF7 200 aaKnown RBP15.51■□□□□ 0.07
UPF1-208ENST00000600012 ERO1BQ86YB8 467 aa15.51■□□□□ 0.07
UPF1-208ENST00000600012 FAM43AQ8N2R8 423 aa15.51■□□□□ 0.07
UPF1-208ENST00000600012 WDR66Q8TBY9 1149 aa15.51■□□□□ 0.07
UPF1-208ENST00000600012 ZCCHC17Q9NP64 241 aaKnown RBP15.51■□□□□ 0.07
UPF1-208ENST00000600012 NOP58Q9Y2X3 529 aaKnown RBP15.51■□□□□ 0.07
UPF1-208ENST00000600012 CAP1Q01518 475 aa15.5■□□□□ 0.07
UPF1-208ENST00000600012 LPIN2Q92539 896 aa15.5■□□□□ 0.07
UPF1-208ENST00000600012 LRRCC1Q9C099 1032 aa15.5■□□□□ 0.07
UPF1-208ENST00000600012 COPRSQ9NQ92 184 aa15.5■□□□□ 0.07
UPF1-208ENST00000600012 ZBTB47Q9UFB7 747 aaPredicted RBP15.5■□□□□ 0.07
UPF1-208ENST00000600012 RAB11FIP3O75154 756 aa15.49■□□□□ 0.07
UPF1-208ENST00000600012 PPIL2Q13356 520 aa15.49■□□□□ 0.07
UPF1-208ENST00000600012 SNAPC2Q13487 334 aa15.49■□□□□ 0.07
UPF1-208ENST00000600012 HSP90AB4PQ58FF6 505 aa15.49■□□□□ 0.07
UPF1-208ENST00000600012 ZNF341Q9BYN7 854 aa15.49■□□□□ 0.07
UPF1-208ENST00000600012 IRF6O14896 467 aa15.48■□□□□ 0.07
UPF1-208ENST00000600012 TLR2O60603 784 aa15.48■□□□□ 0.07
UPF1-208ENST00000600012 G3BP1Q13283 466 aaKnown RBP eCLIP15.48■□□□□ 0.071e-6■□□□□ 10.2
UPF1-208ENST00000600012 SLC9C1Q4G0N8 1177 aa15.48■□□□□ 0.07
UPF1-208ENST00000600012 NBPF11Q86T75 865 aa15.48■□□□□ 0.07
UPF1-208ENST00000600012 RHPN1Q8TCX5 695 aa15.48■□□□□ 0.07
UPF1-208ENST00000600012 ZKSCAN4Q969J2 545 aaPredicted RBP15.48■□□□□ 0.07
UPF1-208ENST00000600012 ZNF333Q96JL9 665 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms