RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MAP7D1Q3KQU3 841 aa23■■□□□ 1.27
UPF1-207ENST00000599848 KRT25Q7Z3Z0 450 aa23■■□□□ 1.27
UPF1-207ENST00000599848 HAUS7Q99871 368 aa23■■□□□ 1.27
UPF1-207ENST00000599848 NUCB1Q02818 461 aa23■■□□□ 1.27
UPF1-207ENST00000599848 ARHGAP27Q6ZUM4 889 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 RXRBP28702 533 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 KIF5AQ12840 1032 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 NMIQ13287 307 aaPredicted RBP22.99■■□□□ 1.27
UPF1-207ENST00000599848 IBTKQ9P2D0 1353 aaPredicted RBP22.99■■□□□ 1.27
UPF1-207ENST00000599848 DEXIO95424 95 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 CCT6AP40227 531 aaKnown RBP22.99■■□□□ 1.27
UPF1-207ENST00000599848 CCDC169A6NNP5 214 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 SSFA2P28290 1259 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 TFCP2Q12800 502 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 RILPL1Q5EBL4 403 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 FAM196AQ6ZSG2 479 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 OTUD6AQ7L8S5 288 aa22.99■■□□□ 1.27
UPF1-207ENST00000599848 KIFC2Q96AC6 838 aa22.98■■□□□ 1.27
UPF1-207ENST00000599848 PALM3A6NDB9 673 aaPredicted RBP22.98■■□□□ 1.27
UPF1-207ENST00000599848 CNGA1P29973 690 aa22.98■■□□□ 1.27
UPF1-207ENST00000599848 ANAPC4Q9UJX5 808 aa22.98■■□□□ 1.27
UPF1-207ENST00000599848 PRIM1P49642 420 aaKnown RBP22.98■■□□□ 1.27
UPF1-207ENST00000599848 KIF11P52732 1056 aa22.98■■□□□ 1.27
UPF1-207ENST00000599848 CCT6BQ92526 530 aa22.98■■□□□ 1.27
UPF1-207ENST00000599848 CCDC42Q96M95 316 aa22.98■■□□□ 1.27
UPF1-207ENST00000599848 NAP1L3Q99457 506 aaPredicted RBP22.98■■□□□ 1.27
UPF1-207ENST00000599848 MTRF1LQ9UGC7 380 aaKnown RBP22.98■■□□□ 1.27
UPF1-207ENST00000599848 CTR9Q6PD62 1173 aa22.98■■□□□ 1.27
UPF1-207ENST00000599848 GMNNO75496 209 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 DHX58Q96C10 678 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 GPCPD1Q9NPB8 672 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 CDC37L1Q7L3B6 337 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 GSDMBQ8TAX9 411 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 FAM204AQ9H8W3 233 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 INF2Q27J81 1249 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 SDSP20132 328 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 SNW1Q13573 536 aaKnown RBP22.97■■□□□ 1.27
UPF1-207ENST00000599848 CNNM4Q6P4Q7 775 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 FCHSD1Q86WN1 690 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 SLC52A2Q9HAB3 445 aa22.97■■□□□ 1.27
UPF1-207ENST00000599848 RIOK3O14730 519 aaKnown RBP22.96■■□□□ 1.27
UPF1-207ENST00000599848 MYCLP12524 364 aaPredicted RBP22.96■■□□□ 1.27
UPF1-207ENST00000599848 ADCY7P51828 1080 aa22.96■■□□□ 1.27
UPF1-207ENST00000599848 NSMFQ6X4W1 530 aa22.96■■□□□ 1.27
UPF1-207ENST00000599848 SYCP2Q9BX26 1530 aa22.96■■□□□ 1.27
UPF1-207ENST00000599848 ABCC2Q92887 1545 aa22.96■■□□□ 1.27
UPF1-207ENST00000599848 CCDC114Q96M63 670 aa22.96■■□□□ 1.27
UPF1-207ENST00000599848 ZNF830Q96NB3 372 aaPredicted RBP22.96■■□□□ 1.27
UPF1-207ENST00000599848 SAP30BPQ9UHR5 308 aaKnown RBP22.96■■□□□ 1.27
UPF1-207ENST00000599848 SMC6Q96SB8 1091 aa22.95■■□□□ 1.27
UPF1-207ENST00000599848 DAPK3O43293 454 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 MCM7P33993 719 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 SEL1L2Q5TEA6 688 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 C2CD5Q86YS7 1000 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 APPBP2Q92624 585 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 DISP3Q9P2K9 1392 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 ZEB2O60315 1214 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 CCDC63Q8NA47 563 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 EDC4Q6P2E9 1401 aaKnown RBP22.95■■□□□ 1.26
UPF1-207ENST00000599848 MAP3K19Q56UN5 1328 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 MCF2L2Q86YR7 1114 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 STIM2Q9P246 746 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 CFAP57Q96MR6 1250 aa22.95■■□□□ 1.26
UPF1-207ENST00000599848 RIOK1Q9BRS2 568 aaKnown RBP22.95■■□□□ 1.26
UPF1-207ENST00000599848 ATF7P17544 494 aaPredicted RBP22.94■■□□□ 1.26
UPF1-207ENST00000599848 GJC1P36383 396 aa22.94■■□□□ 1.26
UPF1-207ENST00000599848 TSGA10Q9BZW7 698 aa22.94■■□□□ 1.26
UPF1-207ENST00000599848 CACYBPQ9HB71 228 aaKnown RBP22.94■■□□□ 1.26
UPF1-207ENST00000599848 FAM193BQ96PV7 902 aaPredicted RBP22.94■■□□□ 1.26
UPF1-207ENST00000599848 FBF1Q8TES7 1133 aa22.94■■□□□ 1.26
UPF1-207ENST00000599848 CARD10Q9BWT7 1032 aa22.94■■□□□ 1.26
UPF1-207ENST00000599848 UQCRHLA0A096LP55 91 aa22.94■■□□□ 1.26
UPF1-207ENST00000599848 UQCRHP07919 91 aa22.94■■□□□ 1.26
UPF1-207ENST00000599848 RSPH3Q86UC2 560 aa22.94■■□□□ 1.26
UPF1-207ENST00000599848 AFAP1L2Q8N4X5 818 aa22.94■■□□□ 1.26
UPF1-207ENST00000599848 CTAGE15A4D2H0 777 aa22.93■■□□□ 1.26
UPF1-207ENST00000599848 ECM2O94769 699 aaPredicted RBP22.93■■□□□ 1.26
UPF1-207ENST00000599848 CTAGE8P0CG41 777 aa22.93■■□□□ 1.26
UPF1-207ENST00000599848 GNG11P61952 73 aa22.93■■□□□ 1.26
UPF1-207ENST00000599848 LETM2Q2VYF4 491 aa22.93■■□□□ 1.26
UPF1-207ENST00000599848 CTAGE6Q86UF2 777 aa22.93■■□□□ 1.26
UPF1-207ENST00000599848 CTAGE4Q8IX94 777 aa22.93■■□□□ 1.26
UPF1-207ENST00000599848 ARPP21Q9UBL0 812 aaPredicted RBP22.93■■□□□ 1.26
UPF1-207ENST00000599848 ERBB4Q15303 1308 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 RTL1A6NKG5 1358 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 CALCOCO2Q13137 446 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 GPR161Q8N6U8 529 aaKnown RBP22.92■■□□□ 1.26
UPF1-207ENST00000599848 FAM89AQ96GI7 184 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 ESPNB1AK53 854 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 RPS8P62241 208 aaKnown RBP22.92■■□□□ 1.26
UPF1-207ENST00000599848 CLUL1Q15846 466 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 A0A1B0GUL7 405 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 HARSP12081 509 aaKnown RBP22.92■■□□□ 1.26
UPF1-207ENST00000599848 NONOQ15233 471 aaKnown RBP eCLIP22.92■■□□□ 1.262e-6■■■□□ 17
UPF1-207ENST00000599848 SUPT20HL1Q3ZLR7 823 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 CC2D2BQ6DHV5 1058 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 ZBTB8OSQ8IWT0 167 aa22.92■■□□□ 1.26
UPF1-207ENST00000599848 GIPC1O14908 333 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 TUBBP07437 444 aa22.91■■□□□ 1.26
UPF1-207ENST00000599848 KRT5P13647 590 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms