RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SERPINA10Q9UK55 444 aa10.92□□□□□ -0.66
SHKBP1-220ENST00000599716 FRAT2O75474 233 aaPredicted RBP10.91□□□□□ -0.66
SHKBP1-220ENST00000599716 MAP3K9P80192 1104 aa10.91□□□□□ -0.66
SHKBP1-220ENST00000599716 SLC9C1Q4G0N8 1177 aa10.91□□□□□ -0.66
SHKBP1-220ENST00000599716 METTL24Q5JXM2 366 aa10.91□□□□□ -0.66
SHKBP1-220ENST00000599716 OTUD7BQ6GQQ9 843 aa10.91□□□□□ -0.66
SHKBP1-220ENST00000599716 Q7L0L9 218 aa10.91□□□□□ -0.66
SHKBP1-220ENST00000599716 VPS37DQ86XT2 251 aa10.91□□□□□ -0.66
SHKBP1-220ENST00000599716 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.91□□□□□ -0.66
SHKBP1-220ENST00000599716 SH3TC2Q8TF17 1288 aa10.91□□□□□ -0.66
SHKBP1-220ENST00000599716 ALDH1L1O75891 902 aa10.9□□□□□ -0.66
SHKBP1-220ENST00000599716 TNFAIP1Q13829 316 aa10.9□□□□□ -0.66
SHKBP1-220ENST00000599716 MIGA2Q7L4E1 593 aa10.9□□□□□ -0.66
SHKBP1-220ENST00000599716 FBXO33Q7Z6M2 555 aa10.9□□□□□ -0.66
SHKBP1-220ENST00000599716 VGLL2Q8N8G2 317 aa10.9□□□□□ -0.66
SHKBP1-220ENST00000599716 WRNIP1Q96S55 665 aa10.9□□□□□ -0.66
SHKBP1-220ENST00000599716 HTATIP2Q9BUP3 242 aa10.9□□□□□ -0.66
SHKBP1-220ENST00000599716 SNCAIPQ9Y6H5 919 aa10.9□□□□□ -0.66
SHKBP1-220ENST00000599716 BTBD19C9JJ37 291 aa10.89□□□□□ -0.67
SHKBP1-220ENST00000599716 IRF6O14896 467 aa10.89□□□□□ -0.67
SHKBP1-220ENST00000599716 ZBTB7BO15156 539 aaPredicted RBP10.89□□□□□ -0.67
SHKBP1-220ENST00000599716 CTGFP29279 349 aa10.89□□□□□ -0.67
SHKBP1-220ENST00000599716 ZFYVE28Q9HCC9 887 aa10.89□□□□□ -0.67
SHKBP1-220ENST00000599716 CSADQ9Y600 493 aa10.89□□□□□ -0.67
SHKBP1-220ENST00000599716 MROH5Q6ZUA9 1318 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 SPDYE5A6NIY4 337 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 ANP32CO43423 234 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 SLURP2P0DP57 97 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 INPP5BP32019 993 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 TNNI2P48788 182 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 GTF2A2P52657 109 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 TCP10Q12799 353 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 DIXDC1Q155Q3 683 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 APOBEC3HQ6NTF7 200 aaKnown RBP10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 MRPL50Q8N5N7 158 aaKnown RBP10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 TEKT1Q969V4 418 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 RAPGEFL1Q9UHV5 662 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 CPA4Q9UI42 421 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 AK9Q5TCS8 1911 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 MYH13Q9UKX3 1938 aa10.88□□□□□ -0.67
SHKBP1-220ENST00000599716 UNCXA6NJT0 531 aa10.87□□□□□ -0.67
SHKBP1-220ENST00000599716 PDE8BO95263 885 aa10.87□□□□□ -0.67
SHKBP1-220ENST00000599716 NFIAQ12857 509 aa10.87□□□□□ -0.67
SHKBP1-220ENST00000599716 RABL6Q3YEC7 729 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-220ENST00000599716 CAVIN4Q5BKX8 364 aa10.87□□□□□ -0.67
SHKBP1-220ENST00000599716 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-220ENST00000599716 UTYO14607 1347 aa10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 RPTORQ8N122 1335 aa10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 LACTBP83111 547 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 MTFR1Q15390 333 aa10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 ERO1BQ86YB8 467 aa10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 ZFPM1Q8IX07 1006 aa10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 SSH1Q8WYL5 1049 aa10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 SHISA4Q96DD7 197 aa10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 ZDHHC15Q96MV8 337 aa10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 SIL1Q9H173 461 aa10.86□□□□□ -0.67
SHKBP1-220ENST00000599716 TLR2O60603 784 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 CETPP11597 493 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 FGFR2P21802 821 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 PRDX5P30044 214 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 RFX5P48382 616 aaPredicted RBP10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 LRIT3Q3SXY7 679 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 UBE2Q1Q7Z7E8 422 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 TBC1D22AQ8WUA7 517 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 SYMPKQ92797 1274 aaKnown RBP10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 SNX27Q96L92 541 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 USP44Q9H0E7 712 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 TMOD2Q9NZR1 351 aa10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.85□□□□□ -0.67
SHKBP1-220ENST00000599716 HDLBPQ00341 1268 aaKnown RBP10.84□□□□□ -0.67
SHKBP1-220ENST00000599716 PPIL2Q13356 520 aa10.84□□□□□ -0.67
SHKBP1-220ENST00000599716 SNAPC2Q13487 334 aa10.84□□□□□ -0.67
SHKBP1-220ENST00000599716 ARHGEF6Q15052 776 aa10.84□□□□□ -0.67
SHKBP1-220ENST00000599716 PUM3Q15397 648 aaKnown RBP10.84□□□□□ -0.67
SHKBP1-220ENST00000599716 CDC42EP5Q6NZY7 148 aa10.84□□□□□ -0.67
SHKBP1-220ENST00000599716 TRIM47Q96LD4 638 aa10.84□□□□□ -0.67
SHKBP1-220ENST00000599716 DAGLAQ9Y4D2 1042 aa10.84□□□□□ -0.67
SHKBP1-220ENST00000599716 ZNF521Q96K83 1311 aa10.84□□□□□ -0.67
SHKBP1-220ENST00000599716 MUC6Q6W4X9 2439 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 EYA2O00167 538 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 PDHXO00330 501 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 IFIT1P09914 478 aaKnown RBP10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 CYP2C8P10632 490 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 PSMC4P43686 418 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 MOGSQ13724 837 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 C17orf99Q6UX52 265 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 ATG9AQ7Z3C6 839 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 CCDC84Q86UT8 332 aaPredicted RBP10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 FAM83AQ86UY5 434 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 NKX2-3Q8TAU0 364 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 CDCA7LQ96GN5 454 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 ZNF341Q9BYN7 854 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 FAM198AQ9UFP1 575 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 STAP2Q9UGK3 403 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 PA2G4Q9UQ80 394 aaKnown RBP10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 SYNGAP1Q96PV0 1343 aa10.83□□□□□ -0.68
SHKBP1-220ENST00000599716 SLC5A1P13866 664 aa10.82□□□□□ -0.68
SHKBP1-220ENST00000599716 OSBPP22059 807 aa10.82□□□□□ -0.68
SHKBP1-220ENST00000599716 ADORA1P30542 326 aa10.82□□□□□ -0.68
SHKBP1-220ENST00000599716 BMP8BP34820 402 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms