RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 PTPN18Q99952 460 aa23.23■■□□□ 1.31
PNKP-213ENST00000599543 DAGLAQ9Y4D2 1042 aa23.23■■□□□ 1.31
PNKP-213ENST00000599543 SALL1Q9NSC2 1324 aa23.23■■□□□ 1.31
PNKP-213ENST00000599543 TRIM27P14373 513 aa23.22■■□□□ 1.31
PNKP-213ENST00000599543 GTF2A2P52657 109 aa23.22■■□□□ 1.31
PNKP-213ENST00000599543 DCAF15Q66K64 600 aa23.22■■□□□ 1.31
PNKP-213ENST00000599543 MS4A4AQ96JQ5 239 aa23.22■■□□□ 1.31
PNKP-213ENST00000599543 ADORA1P30542 326 aa23.21■■□□□ 1.31
PNKP-213ENST00000599543 CCDC102BQ68D86 513 aa23.21■■□□□ 1.31
PNKP-213ENST00000599543 ATF7IPQ6VMQ6 1270 aa23.21■■□□□ 1.31
PNKP-213ENST00000599543 ZGPATQ8N5A5 531 aaKnown RBP23.21■■□□□ 1.31
PNKP-213ENST00000599543 TRIM17Q9Y577 477 aa23.21■■□□□ 1.31
PNKP-213ENST00000599543 CCL15-CCL14A0A0B4J2E2 113 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 SPDYE5A6NIY4 337 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 BCAR3O75815 825 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 MTX1Q13505 466 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 CCL15Q16663 113 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 CDC42EP5Q6NZY7 148 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 FAM151AQ8WW52 585 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 ERO1AQ96HE7 468 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 AKAP2Q9Y2D5 859 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 SNCAIPQ9Y6H5 919 aa23.2■■□□□ 1.3
PNKP-213ENST00000599543 ERO1BQ86YB8 467 aa23.19■■□□□ 1.3
PNKP-213ENST00000599543 BRI3BPQ8WY22 251 aa23.19■■□□□ 1.3
PNKP-213ENST00000599543 ZKSCAN4Q969J2 545 aaPredicted RBP23.19■■□□□ 1.3
PNKP-213ENST00000599543 ZNF341Q9BYN7 854 aa23.19■■□□□ 1.3
PNKP-213ENST00000599543 DOCK2Q92608 1830 aa23.19■■□□□ 1.3
PNKP-213ENST00000599543 A0A1B0GUL7 405 aa23.18■■□□□ 1.3
PNKP-213ENST00000599543 GNAI2P04899 355 aa23.18■■□□□ 1.3
PNKP-213ENST00000599543 TIMM10P62072 90 aa23.18■■□□□ 1.3
PNKP-213ENST00000599543 TCP10Q12799 353 aa23.18■■□□□ 1.3
PNKP-213ENST00000599543 TFCP2Q12800 502 aa23.18■■□□□ 1.3
PNKP-213ENST00000599543 RASGRF1Q13972 1273 aa23.18■■□□□ 1.3
PNKP-213ENST00000599543 MIGA2Q7L4E1 593 aa23.18■■□□□ 1.3
PNKP-213ENST00000599543 OTOP1Q7RTM1 612 aa23.18■■□□□ 1.3
PNKP-213ENST00000599543 CLUAP1Q96AJ1 413 aa23.18■■□□□ 1.3
PNKP-213ENST00000599543 ZBTB22O15209 634 aa23.17■■□□□ 1.3
PNKP-213ENST00000599543 NFIAQ12857 509 aa23.17■■□□□ 1.3
PNKP-213ENST00000599543 MVPQ14764 893 aaKnown RBP23.17■■□□□ 1.3
PNKP-213ENST00000599543 TAF1CQ15572 869 aaPredicted RBP23.17■■□□□ 1.3
PNKP-213ENST00000599543 DZIP1Q86YF9 867 aaKnown RBP23.17■■□□□ 1.3
PNKP-213ENST00000599543 CD99L2Q8TCZ2 262 aa23.17■■□□□ 1.3
PNKP-213ENST00000599543 USP40Q9NVE5 1235 aa23.17■■□□□ 1.3
PNKP-213ENST00000599543 TNNQ9UQP3 1299 aa23.17■■□□□ 1.3
PNKP-213ENST00000599543 PDS5AQ29RF7 1337 aaKnown RBP23.16■■□□□ 1.3
PNKP-213ENST00000599543 CETPP11597 493 aa23.16■■□□□ 1.3
PNKP-213ENST00000599543 SP3Q02447 781 aa23.16■■□□□ 1.3
PNKP-213ENST00000599543 XAGE2Q96GT9 111 aa23.16■■□□□ 1.3
PNKP-213ENST00000599543 ZFYVE28Q9HCC9 887 aa23.16■■□□□ 1.3
PNKP-213ENST00000599543 ABCF2Q9UG63 623 aa23.16■■□□□ 1.3
PNKP-213ENST00000599543 BRCA2P51587 3418 aa23.15■■□□□ 1.3
PNKP-213ENST00000599543 WDHD1O75717 1129 aaPredicted RBP23.15■■□□□ 1.3
PNKP-213ENST00000599543 PPIL2Q13356 520 aa23.15■■□□□ 1.3
PNKP-213ENST00000599543 SNAPC2Q13487 334 aa23.15■■□□□ 1.3
PNKP-213ENST00000599543 ZKSCAN2Q63HK3 967 aa23.15■■□□□ 1.3
PNKP-213ENST00000599543 IRF6O14896 467 aa23.14■■□□□ 1.29
PNKP-213ENST00000599543 SPTY2D1Q68D10 685 aaPredicted RBP23.14■■□□□ 1.29
PNKP-213ENST00000599543 SLF2Q8IX21 1173 aa23.14■■□□□ 1.29
PNKP-213ENST00000599543 FAM43AQ8N2R8 423 aa23.14■■□□□ 1.29
PNKP-213ENST00000599543 NEUROD6Q96NK8 337 aa23.14■■□□□ 1.29
PNKP-213ENST00000599543 FAM198AQ9UFP1 575 aa23.14■■□□□ 1.29
PNKP-213ENST00000599543 INPP5BP32019 993 aa23.13■■□□□ 1.29
PNKP-213ENST00000599543 EFCC1Q9HA90 598 aa23.13■■□□□ 1.29
PNKP-213ENST00000599543 GAKO14976 1311 aa23.12■■□□□ 1.29
PNKP-213ENST00000599543 PPATQ06203 517 aa23.12■■□□□ 1.29
PNKP-213ENST00000599543 GORABQ5T7V8 394 aa23.12■■□□□ 1.29
PNKP-213ENST00000599543 PNMA6EA0A0J9YXQ4 647 aa23.11■■□□□ 1.29
PNKP-213ENST00000599543 G3BP1Q13283 466 aaKnown RBP eCLIP23.11■■□□□ 1.29
PNKP-213ENST00000599543 TMEM57Q8N5G2 664 aa23.11■■□□□ 1.29
PNKP-213ENST00000599543 ZCCHC17Q9NP64 241 aaKnown RBP23.11■■□□□ 1.29
PNKP-213ENST00000599543 PTPN22Q9Y2R2 807 aa23.11■■□□□ 1.29
PNKP-213ENST00000599543 BTBD19C9JJ37 291 aa23.1■■□□□ 1.29
PNKP-213ENST00000599543 RGS3P49796 1198 aa23.1■■□□□ 1.29
PNKP-213ENST00000599543 ARHGEF6Q15052 776 aa23.1■■□□□ 1.29
PNKP-213ENST00000599543 ERICH6Q7L0X2 663 aa23.1■■□□□ 1.29
PNKP-213ENST00000599543 FTSJ3Q8IY81 847 aaKnown RBP23.1■■□□□ 1.29
PNKP-213ENST00000599543 IDI2Q9BXS1 227 aa23.1■■□□□ 1.29
PNKP-213ENST00000599543 ZNF112Q9UJU3 913 aa23.1■■□□□ 1.29
PNKP-213ENST00000599543 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.1■■□□□ 1.29
PNKP-213ENST00000599543 KIAA0100Q14667 2235 aaKnown RBP23.1■■□□□ 1.29
PNKP-213ENST00000599543 MKI67P46013 3256 aaKnown RBP23.09■■□□□ 1.29
PNKP-213ENST00000599543 ENTPD3O75355 529 aa23.09■■□□□ 1.29
PNKP-213ENST00000599543 BTDP43251 543 aa23.09■■□□□ 1.29
PNKP-213ENST00000599543 ZFPM1Q8IX07 1006 aa23.09■■□□□ 1.29
PNKP-213ENST00000599543 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.09■■□□□ 1.29
PNKP-213ENST00000599543 RFX7Q2KHR2 1363 aa23.09■■□□□ 1.29
PNKP-213ENST00000599543 RBBP6Q7Z6E9 1792 aaKnown RBP23.09■■□□□ 1.29
PNKP-213ENST00000599543 MROH7-TTC4A0A0A0MT08 1334 aa23.08■■□□□ 1.29
PNKP-213ENST00000599543 TLR2O60603 784 aa23.08■■□□□ 1.29
PNKP-213ENST00000599543 MECOMQ03112 1051 aa23.08■■□□□ 1.29
PNKP-213ENST00000599543 NOL9Q5SY16 702 aaKnown RBP23.08■■□□□ 1.29
PNKP-213ENST00000599543 ZSCAN29Q8IWY8 852 aaPredicted RBP23.08■■□□□ 1.29
PNKP-213ENST00000599543 SPATA5Q8NB90 893 aa23.08■■□□□ 1.29
PNKP-213ENST00000599543 FAM163AQ96GL9 167 aaPredicted RBP23.08■■□□□ 1.29
PNKP-213ENST00000599543 HMG20BQ9P0W2 317 aa23.07■■□□□ 1.28
PNKP-213ENST00000599543 DOCK1Q14185 1865 aa23.07■■□□□ 1.28
PNKP-213ENST00000599543 ZSWIM8A7E2V4 1837 aa23.06■■□□□ 1.28
PNKP-213ENST00000599543 ATRNL1Q5VV63 1379 aa23.06■■□□□ 1.28
PNKP-213ENST00000599543 ARID4AP29374 1257 aaPredicted RBP23.06■■□□□ 1.28
PNKP-213ENST00000599543 CAP1Q01518 475 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms