RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 PPP1R12BO60237 982 aaPredicted RBP15□□□□□ -0.01
LIG1-217ENST00000599165 TRPA1O75762 1119 aa15□□□□□ -0.01
LIG1-217ENST00000599165 TM4SF4P48230 202 aa15□□□□□ -0.01
LIG1-217ENST00000599165 TBC1D9Q6ZT07 1266 aa15□□□□□ -0.01
LIG1-217ENST00000599165 FAM83AQ86UY5 434 aa15□□□□□ -0.01
LIG1-217ENST00000599165 SPATA5Q8NB90 893 aa15□□□□□ -0.01
LIG1-217ENST00000599165 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15□□□□□ -0.01
LIG1-217ENST00000599165 WNK4Q96J92 1243 aa15□□□□□ -0.01
LIG1-217ENST00000599165 FAM198AQ9UFP1 575 aa15□□□□□ -0.01
LIG1-217ENST00000599165 DOCK2Q92608 1830 aa15□□□□□ -0.01
LIG1-217ENST00000599165 MAST2Q6P0Q8 1798 aa15□□□□□ -0.01
LIG1-217ENST00000599165 CDK5RAP2Q96SN8 1893 aa14.99□□□□□ -0.01
LIG1-217ENST00000599165 ZFPM1Q8IX07 1006 aa14.99□□□□□ -0.01
LIG1-217ENST00000599165 CNKSR2Q8WXI2 1034 aa14.99□□□□□ -0.01
LIG1-217ENST00000599165 EAF2Q96CJ1 260 aaPredicted RBP14.99□□□□□ -0.01
LIG1-217ENST00000599165 DBNLQ9UJU6 430 aaKnown RBP14.99□□□□□ -0.01
LIG1-217ENST00000599165 AK9Q5TCS8 1911 aa14.99□□□□□ -0.01
LIG1-217ENST00000599165 ATRNL1Q5VV63 1379 aa14.98□□□□□ -0.01
LIG1-217ENST00000599165 UNCXA6NJT0 531 aa14.98□□□□□ -0.01
LIG1-217ENST00000599165 TNNI2P48788 182 aa14.98□□□□□ -0.01
LIG1-217ENST00000599165 MECOMQ03112 1051 aa14.98□□□□□ -0.01
LIG1-217ENST00000599165 REM2Q8IYK8 340 aaPredicted RBP14.98□□□□□ -0.01
LIG1-217ENST00000599165 FAM163AQ96GL9 167 aaPredicted RBP14.98□□□□□ -0.01
LIG1-217ENST00000599165 R3HDMLQ9H3Y0 253 aa14.98□□□□□ -0.01
LIG1-217ENST00000599165 ABCF2Q9UG63 623 aa14.98□□□□□ -0.01
LIG1-217ENST00000599165 EXOC6BQ9Y2D4 811 aa14.98□□□□□ -0.01
LIG1-217ENST00000599165 IREB2P48200 963 aaKnown RBP14.97□□□□□ -0.01
LIG1-217ENST00000599165 RHBDL3P58872 404 aa14.97□□□□□ -0.01
LIG1-217ENST00000599165 VGLL4Q14135 290 aa14.97□□□□□ -0.01
LIG1-217ENST00000599165 SH3BP5LQ7L8J4 393 aa14.97□□□□□ -0.01
LIG1-217ENST00000599165 ANKRD13AQ8IZ07 590 aa14.97□□□□□ -0.01
LIG1-217ENST00000599165 ZGPATQ8N5A5 531 aaKnown RBP14.97□□□□□ -0.01
LIG1-217ENST00000599165 FAM151AQ8WW52 585 aa14.97□□□□□ -0.01
LIG1-217ENST00000599165 NSUN4Q96CB9 384 aaKnown RBP14.97□□□□□ -0.01
LIG1-217ENST00000599165 SLC10A4Q96EP9 437 aa14.97□□□□□ -0.01
LIG1-217ENST00000599165 DDX19BQ9UMR2 479 aa14.97□□□□□ -0.01
LIG1-217ENST00000599165 MROH7-TTC4A0A0A0MT08 1334 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 IGF2BP3O00425 579 aaKnown RBP eCLIP14.96□□□□□ -0.01
LIG1-217ENST00000599165 WDHD1O75717 1129 aaPredicted RBP14.96□□□□□ -0.01
LIG1-217ENST00000599165 ZBTB48P10074 688 aaPredicted RBP14.96□□□□□ -0.01
LIG1-217ENST00000599165 MS4A1P11836 297 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 TCP10Q12799 353 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 OS9Q13438 667 aaPredicted RBP14.96□□□□□ -0.01
LIG1-217ENST00000599165 ZNF512BQ96KM6 892 aaPredicted RBP14.96□□□□□ -0.01
LIG1-217ENST00000599165 IDI2Q9BXS1 227 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 CCDC8Q9H0W5 538 aaPredicted RBP14.96□□□□□ -0.01
LIG1-217ENST00000599165 ELP3Q9H9T3 547 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 DDX4Q9NQI0 724 aaKnown RBP14.96□□□□□ -0.01
LIG1-217ENST00000599165 SNRKQ9NRH2 765 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 USP40Q9NVE5 1235 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 TMOD2Q9NZR1 351 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 SNCAIPQ9Y6H5 919 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 SIPA1L1O43166 1804 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 FOCADQ5VW36 1801 aa14.96□□□□□ -0.01
LIG1-217ENST00000599165 GPR75-ASB3A0A0A6YYF3 556 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 TBC1D8O95759 1140 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 CYP2E1P05181 493 aaPredicted RBP14.95□□□□□ -0.02
LIG1-217ENST00000599165 UQCRFS1P1P0C7P4 283 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 SLURP2P0DP57 97 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 BTDP43251 543 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 MAP3K9P80192 1104 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 GORABQ5T7V8 394 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 DZIP1Q86YF9 867 aaKnown RBP14.95□□□□□ -0.02
LIG1-217ENST00000599165 MS4A4AQ96JQ5 239 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 PTPN18Q99952 460 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 CFHR5Q9BXR6 569 aa14.95□□□□□ -0.02
LIG1-217ENST00000599165 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.95□□□□□ -0.02
LIG1-217ENST00000599165 TESPA1A2RU30 521 aaPredicted RBP14.94□□□□□ -0.02
LIG1-217ENST00000599165 CAPN15O75808 1086 aa14.94□□□□□ -0.02
LIG1-217ENST00000599165 RGS3P49796 1198 aa14.94□□□□□ -0.02
LIG1-217ENST00000599165 PDE3AQ14432 1141 aa14.94□□□□□ -0.02
LIG1-217ENST00000599165 ERICH6Q7L0X2 663 aa14.94□□□□□ -0.02
LIG1-217ENST00000599165 MIGA2Q7L4E1 593 aa14.94□□□□□ -0.02
LIG1-217ENST00000599165 RPAP2Q8IXW5 612 aaPredicted RBP14.94□□□□□ -0.02
LIG1-217ENST00000599165 ZKSCAN4Q969J2 545 aaPredicted RBP14.94□□□□□ -0.02
LIG1-217ENST00000599165 OPTNQ96CV9 577 aa14.94□□□□□ -0.02
LIG1-217ENST00000599165 PIH1D3Q9NQM4 214 aaKnown RBP14.94□□□□□ -0.02
LIG1-217ENST00000599165 MANSC4A6NHS7 340 aaPredicted RBP14.93□□□□□ -0.02
LIG1-217ENST00000599165 INPP5BP32019 993 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 ZAP70P43403 619 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 SREBF2Q12772 1141 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 TTC39AQ5SRH9 613 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 SPTY2D1Q68D10 685 aaPredicted RBP14.93□□□□□ -0.02
LIG1-217ENST00000599165 ADGRA1Q86SQ6 560 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 IFNL1Q8IU54 200 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 RHPN1Q8TCX5 695 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 ABHD8Q96I13 439 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 WRNIP1Q96S55 665 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 MCOLN1Q9GZU1 580 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 ZNF112Q9UJU3 913 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 PHIPQ8WWQ0 1821 aa14.93□□□□□ -0.02
LIG1-217ENST00000599165 DDTLA6NHG4 134 aaPredicted RBP14.92□□□□□ -0.02
LIG1-217ENST00000599165 SPDYE5A6NIY4 337 aa14.92□□□□□ -0.02
LIG1-217ENST00000599165 ENTPD3O75355 529 aa14.92□□□□□ -0.02
LIG1-217ENST00000599165 BRI3BPQ8WY22 251 aa14.92□□□□□ -0.02
LIG1-217ENST00000599165 IL1RAPL2Q9NP60 686 aa14.92□□□□□ -0.02
LIG1-217ENST00000599165 NDUFB9Q9Y6M9 179 aa14.92□□□□□ -0.02
LIG1-217ENST00000599165 PTPRFP10586 1907 aa14.92□□□□□ -0.02
LIG1-217ENST00000599165 MAP3K10Q02779 954 aa14.91□□□□□ -0.02
LIG1-217ENST00000599165 CCDC158Q5M9N0 1113 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms