RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 NBPF12Q5TAG4 269 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-217ENST00000598558 PI4K2BQ8TCG2 481 aa17.32■□□□□ 0.36
SHKBP1-217ENST00000598558 TMEM39BQ9GZU3 492 aa17.32■□□□□ 0.36
SHKBP1-217ENST00000598558 FZD1Q9UP38 647 aa17.32■□□□□ 0.36
SHKBP1-217ENST00000598558 NAA16Q6N069 864 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-217ENST00000598558 PAG1Q9NWQ8 432 aa17.31■□□□□ 0.36
SHKBP1-217ENST00000598558 FAM198AQ9UFP1 575 aa17.31■□□□□ 0.36
SHKBP1-217ENST00000598558 MAP4K4O95819 1239 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-217ENST00000598558 DYNLL1P63167 89 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-217ENST00000598558 CHD1LQ86WJ1 897 aa17.3■□□□□ 0.36
SHKBP1-217ENST00000598558 DDX4Q9NQI0 724 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-217ENST00000598558 POLR2AP24928 1970 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 MYH13Q9UKX3 1938 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 SSC5DA1L4H1 1573 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 WDHD1O75717 1129 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 LDHCP07864 332 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 MX1P20591 662 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 CYP7A1P22680 504 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 GSTO1P78417 241 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 SAPCD2Q86UD0 394 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 MAGEB6Q8N7X4 407 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 GBA2Q9HCG7 927 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 STAP2Q9UGK3 403 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 MKRN1Q9UHC7 482 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 TLL2Q9Y6L7 1015 aa17.29■□□□□ 0.36
SHKBP1-217ENST00000598558 TCRBV5S4A2TA0A5A2 114 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 PDE6AP16499 860 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 PDE4AP27815 886 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 PDE1AP54750 535 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 PPP4CP60510 307 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 TCP10Q12799 353 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 PRKG1Q13976 671 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 FKBP1CQ5VVH2 108 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 SH3BP5LQ7L8J4 393 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 SLF2Q8IX21 1173 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 SH3RF3Q8TEJ3 882 aaPredicted RBP17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 AATFQ9NY61 560 aaKnown RBP eCLIP17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 RFX7Q2KHR2 1363 aa17.28■□□□□ 0.36
SHKBP1-217ENST00000598558 TTC41PQ6P2S7 1318 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 UBE2Q2LH0YL09 131 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 CENPBP07199 599 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 SLURP2P0DP57 97 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 RGS3P49796 1198 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 MAP3K12Q12852 859 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 TTF1Q15361 905 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 SLC9C2Q5TAH2 1124 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 FAM83AQ86UY5 434 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 PLEKHM2Q8IWE5 1019 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 MIGA1Q8NAN2 632 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 IDI2Q9BXS1 227 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 ABT1Q9ULW3 272 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 PPP2R3BQ9Y5P8 575 aa17.27■□□□□ 0.36
SHKBP1-217ENST00000598558 ZNF532Q9HCE3 1301 aa17.26■□□□□ 0.35
SHKBP1-217ENST00000598558 RASSF10A6NK89 507 aa17.26■□□□□ 0.35
SHKBP1-217ENST00000598558 C2orf69Q8N8R5 385 aa17.26■□□□□ 0.35
SHKBP1-217ENST00000598558 FAM151AQ8WW52 585 aa17.26■□□□□ 0.35
SHKBP1-217ENST00000598558 IGSF3O75054 1194 aa17.25■□□□□ 0.35
SHKBP1-217ENST00000598558 USP2O75604 605 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-217ENST00000598558 TNFAIP1Q13829 316 aa17.25■□□□□ 0.35
SHKBP1-217ENST00000598558 DEFB115Q30KQ5 88 aa17.25■□□□□ 0.35
SHKBP1-217ENST00000598558 GPATCH3Q96I76 525 aa17.25■□□□□ 0.35
SHKBP1-217ENST00000598558 RIOK1Q9BRS2 568 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-217ENST00000598558 TMOD2Q9NZR1 351 aa17.25■□□□□ 0.35
SHKBP1-217ENST00000598558 DDTLA6NHG4 134 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 GLRX3O76003 335 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 ADD2P35612 726 aa17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 TNNI2P48788 182 aa17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 VEGFBP49765 207 aa17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 HUNKP57058 714 aa17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 PICALMQ13492 652 aa17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 CYP4F22Q6NT55 531 aa17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 KBTBD3Q8NAB2 608 aa17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 KLRG1Q96E93 195 aa17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 ZBTB47Q9UFB7 747 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 MYO5AQ9Y4I1 1855 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-217ENST00000598558 ENTPD3O75355 529 aa17.23■□□□□ 0.35
SHKBP1-217ENST00000598558 SUPT20HL1Q3ZLR7 823 aa17.23■□□□□ 0.35
SHKBP1-217ENST00000598558 LDLRAD1Q5T700 205 aa17.23■□□□□ 0.35
SHKBP1-217ENST00000598558 TEX11Q8IYF3 940 aa17.23■□□□□ 0.35
SHKBP1-217ENST00000598558 MYH2Q9UKX2 1941 aa17.22■□□□□ 0.35
SHKBP1-217ENST00000598558 ERC2O15083 957 aa17.22■□□□□ 0.35
SHKBP1-217ENST00000598558 BAG3O95817 575 aa17.22■□□□□ 0.35
SHKBP1-217ENST00000598558 MAP3K11Q16584 847 aa17.22■□□□□ 0.35
SHKBP1-217ENST00000598558 MIGA2Q7L4E1 593 aa17.22■□□□□ 0.35
SHKBP1-217ENST00000598558 SKAP1Q86WV1 359 aa17.22■□□□□ 0.35
SHKBP1-217ENST00000598558 TGFBRAP1Q8WUH2 860 aa17.22■□□□□ 0.35
SHKBP1-217ENST00000598558 ZIC5Q96T25 663 aa17.22■□□□□ 0.35
SHKBP1-217ENST00000598558 ANGEL1Q9UNK9 670 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-217ENST00000598558 ECM29Q5VYK3 1845 aa17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 ATRNL1Q5VV63 1379 aa17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 NF2P35240 595 aa17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 FKBP1BP68106 108 aa17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 TTLL12Q14166 644 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 MAPKAPK5Q8IW41 473 aa17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 LCORLQ8N3X6 602 aa17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 CLMNQ96JQ2 1002 aa17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 PUS7LQ9H0K6 701 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 OSBPL3Q9H4L5 887 aa17.21■□□□□ 0.35
SHKBP1-217ENST00000598558 TRPM7Q96QT4 1865 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 CEP350Q5VT06 3117 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms