RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	CT47B1	P0C2W7	299 aa	Predicted RBP	13.12	□□□□□ -0.31
LSM4-205	ENST00000597776	ADORA1	P30542	326 aa		13.12	□□□□□ -0.31
LSM4-205	ENST00000597776	NFIA	Q12857	509 aa		13.12	□□□□□ -0.31
LSM4-205	ENST00000597776	CDC42EP5	Q6NZY7	148 aa		13.12	□□□□□ -0.31
LSM4-205	ENST00000597776	ERO1B	Q86YB8	467 aa		13.12	□□□□□ -0.31
LSM4-205	ENST00000597776	API5	Q9BZZ5	524 aa	Known RBP	13.12	□□□□□ -0.31
LSM4-205	ENST00000597776	IRF6	O14896	467 aa		13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	LDHB	P07195	334 aa	Known RBP	13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	INPP5B	P32019	993 aa		13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	IL15	P40933	162 aa	Predicted RBP	13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	RARS	P54136	660 aa	Known RBP	13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	PRPF38B	Q5VTL8	546 aa	Known RBP	13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	DCAF15	Q66K64	600 aa		13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	FAM151A	Q8WW52	585 aa		13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	HOOK2	Q96ED9	719 aa		13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	ZNF341	Q9BYN7	854 aa		13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	ZFYVE28	Q9HCC9	887 aa		13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	GNL3L	Q9NVN8	582 aa	Known RBP	13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	FBXO3	Q9UK99	471 aa		13.11	□□□□□ -0.31
LSM4-205	ENST00000597776	BTBD19	C9JJ37	291 aa		13.1	□□□□□ -0.31
LSM4-205	ENST00000597776	CETP	P11597	493 aa		13.1	□□□□□ -0.31
LSM4-205	ENST00000597776	PPIL2	Q13356	520 aa		13.1	□□□□□ -0.31
LSM4-205	ENST00000597776	SNAPC2	Q13487	334 aa		13.1	□□□□□ -0.31
LSM4-205	ENST00000597776	FAM198A	Q9UFP1	575 aa		13.1	□□□□□ -0.31
LSM4-205	ENST00000597776	ZSWIM8	A7E2V4	1837 aa		13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	CCDC102B	Q68D86	513 aa		13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	INTS3	Q68E01	1043 aa	Known RBP	13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	ZFPM1	Q8IX07	1006 aa		13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	ARMC5	Q96C12	935 aa		13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	COPRS	Q9NQ92	184 aa		13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	USP40	Q9NVE5	1235 aa		13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	DENND2A	Q9ULE3	1009 aa		13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	PTCH2	Q9Y6C5	1203 aa		13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	SALL1	Q9NSC2	1324 aa		13.09	□□□□□ -0.31
LSM4-205	ENST00000597776	SEMA3E	O15041	775 aa		13.08	□□□□□ -0.32
LSM4-205	ENST00000597776	ECM2	O94769	699 aa	Predicted RBP	13.08	□□□□□ -0.32
LSM4-205	ENST00000597776	TIMM10	P62072	90 aa		13.08	□□□□□ -0.32
LSM4-205	ENST00000597776	RASGRF1	Q13972	1273 aa		13.08	□□□□□ -0.32
LSM4-205	ENST00000597776	ARHGAP39	Q9C0H5	1083 aa		13.08	□□□□□ -0.32
LSM4-205	ENST00000597776	ZNF112	Q9UJU3	913 aa		13.08	□□□□□ -0.32
LSM4-205	ENST00000597776	HDAC5	Q9UQL6	1122 aa		13.08	□□□□□ -0.32
LSM4-205	ENST00000597776	TNN	Q9UQP3	1299 aa		13.08	□□□□□ -0.32
LSM4-205	ENST00000597776	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.08	□□□□□ -0.32
LSM4-205	ENST00000597776	CCER2	I3L3R5	266 aa		13.07	□□□□□ -0.32
LSM4-205	ENST00000597776	SRGAP3	O43295	1099 aa		13.07	□□□□□ -0.32
LSM4-205	ENST00000597776	TLR2	O60603	784 aa		13.07	□□□□□ -0.32
LSM4-205	ENST00000597776	EN2	P19622	333 aa	Predicted RBP	13.07	□□□□□ -0.32
LSM4-205	ENST00000597776	PPAT	Q06203	517 aa		13.07	□□□□□ -0.32
LSM4-205	ENST00000597776	TFCP2	Q12800	502 aa		13.07	□□□□□ -0.32
LSM4-205	ENST00000597776	ZCCHC17	Q9NP64	241 aa	Known RBP	13.07	□□□□□ -0.32
LSM4-205	ENST00000597776	ABCF2	Q9UG63	623 aa		13.07	□□□□□ -0.32
LSM4-205	ENST00000597776		A0A1B0GUL7	405 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	WDHD1	O75717	1129 aa	Predicted RBP	13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	MYC	P01106	439 aa	Predicted RBP	13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	GNAI3	P08754	354 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	SLURP2	P0DP57	97 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	RGS3	P49796	1198 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	LACTB	P83111	547 aa	Predicted RBP	13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	SLC9C1	Q4G0N8	1177 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	DZIP1	Q86YF9	867 aa	Known RBP	13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	ARHGAP45	Q92619	1136 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	XAGE2	Q96GT9	111 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	ZNF333	Q96JL9	665 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	GAK	O14976	1311 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	RFX7	Q2KHR2	1363 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	ATRNL1	Q5VV63	1379 aa		13.06	□□□□□ -0.32
LSM4-205	ENST00000597776	AK9	Q5TCS8	1911 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	DOCK2	Q92608	1830 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	PDHX	O00330	501 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	TRIM27	P14373	513 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	MOGS	Q13724	837 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	ARHGEF6	Q15052	776 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	NOL9	Q5SY16	702 aa	Known RBP	13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	SH3BP5L	Q7L8J4	393 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	ZGPAT	Q8N5A5	531 aa	Known RBP	13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	SH3TC2	Q8TF17	1288 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	CPA4	Q9UI42	421 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	KCNH4	Q9UQ05	1017 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	MYH2	Q9UKX2	1941 aa		13.05	□□□□□ -0.32
LSM4-205	ENST00000597776	BCAR3	O75815	825 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	CTGF	P29279	349 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	MTX1	Q13505	466 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	MVP	Q14764	893 aa	Known RBP	13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	KIF22	Q14807	665 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	C17orf99	Q6UX52	265 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	PI16	Q6UXB8	463 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	ANKRD23	Q86SG2	305 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	ZNF384	Q8TF68	577 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	FRAT1	Q92837	279 aa	Predicted RBP	13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	CLUAP1	Q96AJ1	413 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	IDI2	Q9BXS1	227 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	DDX4	Q9NQI0	724 aa	Known RBP	13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	PDS5A	Q29RF7	1337 aa	Known RBP	13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	ADGRA2	Q96PE1	1338 aa		13.04	□□□□□ -0.32
LSM4-205	ENST00000597776	KIAA0100	Q14667	2235 aa	Known RBP	13.03	□□□□□ -0.32
LSM4-205	ENST00000597776	PNMA6E	A0A0J9YXQ4	647 aa		13.03	□□□□□ -0.32
LSM4-205	ENST00000597776	DDTL	A6NHG4	134 aa	Predicted RBP	13.03	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 23 ms